Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0897.Seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    30   0.36 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.64 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    27   1.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.9  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   5.9  
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    25   7.9  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.9  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   7.9  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 116  ILAALKTEAALHENLLADVTNTFEETDDLKTAA--NAWYIHSNFD 244
            IL   K    LH++LL ++   FE  DD+  A+    W I   +D
Sbjct: 1226 ILKLFKGRYTLHDSLLCELLAYFETLDDISVASRYKGWVITDEYD 1270


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 350 VTSVMEATEDTAAMVVSHLTTVTKTPIMKQLII------*ATDTTRNLVTETFITMASP 508
           VT+VM  TE T        TTVT TP+    +        +T+T+ + VT T IT   P
Sbjct: 13  VTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVP 71


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 155  NLLADVTNTFEETDDLKTAANAWY-IHSNFDRNYL 256
            N +A++ N F     + T    WY I++NFD NYL
Sbjct: 1064 NRVAEMVNNFFYKSVVWTFTLFWYQIYNNFDANYL 1098


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 125 ALKTEAALHENLLADVTNTFEETDDLKTAANAWYI 229
           A++  A   E   ADVTN+ +  + L T  N W++
Sbjct: 225 AVEWPAPEEETRKADVTNSLDPANVLSTELNTWHV 259


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 167  DVTNTFEETDDLKTAAN 217
            D+TNT  E DDL+  AN
Sbjct: 3922 DITNTLNEDDDLEELAN 3938


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 689 VGRFFMKLGHSLNVNSILKIINKLNYSVQRFFGKTLVII 573
           +GR F+  G  +   S+ +   KLN   Q FF K ++I+
Sbjct: 347 IGRTFIMPGQQIRRKSVRR---KLNVQPQEFFDKNVLIV 382


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 34  VINH-YLKFLKLQHKYEFKNSNYIPFRMYL 120
           ++NH Y  F  +  K  F  S +IP ++YL
Sbjct: 158 ILNHDYYDFRPIAIKILFSKSKFIPLKIYL 187


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/38 (21%), Positives = 23/38 (60%)
 Frame = -2

Query: 594 WENFGNNYFTN*RCIFITMNILCILLPN*GDAIVINVS 481
           WE FG + +   + +++ + + C+ L +  ++ ++N+S
Sbjct: 273 WELFGRDQYIQCQALYLIIRLTCLYLLSCYESEILNLS 310


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 64  LQHKYEFKNSNYIPF 108
           L  K EFKN NY+P+
Sbjct: 509 LSRKDEFKNPNYVPY 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,421
Number of Sequences: 5004
Number of extensions: 48585
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)