Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0897.Seq
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-P...    33   0.49 
AY095051-1|AAM11379.1| 1838|Drosophila melanogaster LD40310p pro...    30   3.4  
AE014134-1014|AAN10569.1| 1838|Drosophila melanogaster CG9088-PB...    30   3.4  
AE014134-1013|AAF52319.1| 1838|Drosophila melanogaster CG9088-PA...    30   3.4  

>AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-PA,
            isoform A protein.
          Length = 1853

 Score = 32.7 bits (71), Expect = 0.49
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +2

Query: 314  VEITTADIQVTAVTSVMEATED----TAAMVVSHLTTVTKTPIMKQLII*ATDTTRNLVT 481
            VEITT +   TA   +   TED    TAA   +  +T T+ P         T TT +   
Sbjct: 1651 VEITTTNTSPTATEELTTTTEDKTTTTAAPTTAVSSTTTEEPSTSTTTEEITTTTSSTAE 1710

Query: 482  ETFITMASP 508
            E   T ASP
Sbjct: 1711 EATTTTASP 1719


>AY095051-1|AAM11379.1| 1838|Drosophila melanogaster LD40310p protein.
          Length = 1838

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 415  NRSKMRDHHCRCILRSLHYRRYCCNLNICRSYFHLD 308
            N++ MRD  C C      +R    N  +CR +FH D
Sbjct: 1287 NKNPMRDMFCLC---KSEFRNLMFNCQLCRDWFHED 1319


>AE014134-1014|AAN10569.1| 1838|Drosophila melanogaster CG9088-PB,
            isoform B protein.
          Length = 1838

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 415  NRSKMRDHHCRCILRSLHYRRYCCNLNICRSYFHLD 308
            N++ MRD  C C      +R    N  +CR +FH D
Sbjct: 1287 NKNPMRDMFCLC---KSEFRNLMFNCQLCRDWFHED 1319


>AE014134-1013|AAF52319.1| 1838|Drosophila melanogaster CG9088-PA,
            isoform A protein.
          Length = 1838

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 415  NRSKMRDHHCRCILRSLHYRRYCCNLNICRSYFHLD 308
            N++ MRD  C C      +R    N  +CR +FH D
Sbjct: 1287 NKNPMRDMFCLC---KSEFRNLMFNCQLCRDWFHED 1319


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,006,509
Number of Sequences: 53049
Number of extensions: 493700
Number of successful extensions: 971
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)