Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0897.Seq
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical ...    32   0.45 
U41014-2|AAK32945.1|  182|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AC084197-9|AAK95894.1|  322|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine re...    28   7.3  
AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical ...    28   7.3  

>AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical
           protein Y113G7A.11 protein.
          Length = 412

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = -1

Query: 562 LKVYFYHYEYPLYPVTKLG*CHCYKCFRNQVSCSIRSLND*LLHNRGF 419
           LK +F+HY  P YP TK    + Y C RN   C    L     HNR F
Sbjct: 147 LKTHFHHYNIPKYPDTK----YIY-CVRNPKDC----LTSYFHHNRNF 185


>U41014-2|AAK32945.1|  182|Caenorhabditis elegans Hypothetical
           protein C06G1.2 protein.
          Length = 182

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
 Frame = +2

Query: 275 TDTDS*LGSKIIQVEITTADIQVTAVTSVMEATE--DTAAMVVSHLTTVTKTPIMKQLII 448
           T+  + +     + E TT  ++ T  T+    TE   T         T TK     +++I
Sbjct: 72  TEATTTVAETTTEAETTTTTVESTTTTTEATTTEAATTTTTTTEEPATTTKEITTTEIVI 131

Query: 449 *ATDTTRNLVTETFITMASP*FGNRIQRIF 538
             T  T  +  E+F+    P      +R+F
Sbjct: 132 AETTPTEEVDEESFLGFKKPDLATIYRRLF 161


>AC084197-9|AAK95894.1|  322|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.29 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 382 CILRSLHYRRYCCNLNICRSYFHLDNFRTQ 293
           CI RS+ YR+Y   + +CRS+   ++ R +
Sbjct: 126 CIRRSVSYRKYTYRMAVCRSWELWESIRQE 155


>AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein54 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 656 LNVNSILKIINKL-NYSVQRFFGKTLVIIILQIEGVFLS 543
           +N   +L    KL N+S+  F  K L +II  I G FLS
Sbjct: 167 MNYPDLLPQFQKLPNFSIYEFSSKFLALIIFSILGGFLS 205


>AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical
           protein C05C8.5 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = +2

Query: 149 HENLLADVTNTFEETDDLKTAANAWYIHSNFDRNYLTVLAAYTDTDS*LGSKIIQVEITT 328
           H N+L ++       DD  T  N  ++   F++ ++ + +  +D      + I+QV +T 
Sbjct: 101 HRNVLQNLVVRVNVDDDFFTTTNLSFLSEFFEKQWIELDSDVSDRGL-FWNSIMQVRLTI 159

Query: 329 ADIQVTAVTSVMEATED 379
            + Q+   + +M+ T D
Sbjct: 160 QE-QIRRKSVIMQKTYD 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,730
Number of Sequences: 27780
Number of extensions: 275387
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)