Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0896.Seq
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   3.3  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   5.8  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   5.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.8  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 341 IHFRKEKGFKVHWNAGRLENFLYSVDKLRPTPSP 240
           +  +KE G+KV W+  +    +Y  D+     SP
Sbjct: 303 VELQKEGGWKVVWDDTQKNTHMYKGDQWVAFDSP 336


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 641 RSEIRAYCEIRFRLRREDGPQEGDRRPQ 724
           + E+RA  EI  + RRE   QE  ++ Q
Sbjct: 62  KKELRAVKEINEQARREREEQERHKQQQ 89


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 641 RSEIRAYCEIRFRLRREDGPQEGDRRPQ 724
           + E+RA  EI  + RRE   QE  ++ Q
Sbjct: 213 KKELRAVKEINEQARREREEQERHKQQQ 240


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 641 RSEIRAYCEIRFRLRREDGPQEGDRRPQ 724
           + E+RA  EI  + RRE   QE  ++ Q
Sbjct: 272 KKELRAVKEINEQARREREEQERHKQQQ 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,411
Number of Sequences: 336
Number of extensions: 4261
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)