Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0896.Seq
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...   111   1e-25
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    99   3e-22
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    29   0.68 
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    27   2.1  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    27   2.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   3.6  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   3.6  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.8  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   8.3  

>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score =  111 bits (267), Expect = 1e-25
 Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 4/156 (2%)
 Frame = +3

Query: 270 AVQEVFKAASIPVDFESFFFSEV---NPTLSAPLEDVVNSIAVNKICIKGILATPDFSHT 440
           AV E+FK A++P++FE    + +   N +    L + + S+  NK+ +KGIL TP F   
Sbjct: 38  AVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGLKGILFTP-FEKG 96

Query: 441 GELQTLNMKLRNALDLYANVVQ*V-IAQREVQAPGRGLHHHQRTDRREYSALEHESVPGV 617
           G   + N+ LR  LD+YA++V    I   + +         +     EYS LEH+SVPGV
Sbjct: 97  GHT-SFNVALRKELDIYASLVLIKNIPGFKTRHDNVDFAIIRENTEGEYSGLEHQSVPGV 155

Query: 618 VECLKIITAAKSERIAKFAFDYAVKMGRKKVTAVHK 725
           VE LKIIT  KS+RIA+FAFD+A++ GRK VT +HK
Sbjct: 156 VESLKIITEYKSKRIAQFAFDFALQNGRKSVTCIHK 191



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 214 GRIKCTLIPGDGVGLSLS 267
           G+   TLIPGDG+G   S
Sbjct: 19  GKYTVTLIPGDGIGRETS 36


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =   99 bits (238), Expect = 3e-22
 Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
 Frame = +3

Query: 204 NKGRSYQMHLDSWGRCRPELVYAVQEVFKAASIPVDFESFFFSEV--NPTLSAPLEDVVN 377
           N   +Y + + +     PE+  +V+ +FKAA +P+++E      +  N T + P +D   
Sbjct: 41  NANGNYTVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIP-DDAKE 99

Query: 378 SIAVNKICIKGILATPDFSHTGELQTLNMKLRNALDLYANVVQ*V-IAQREVQAPGRGLH 554
           S+  NK+ +KG LATP     G + ++N+ LR    L+ANV   V I   +         
Sbjct: 100 SVRKNKVALKGPLATP--IGKGHV-SMNLTLRRTFGLFANVRPCVSITGYKTPYDNVNTV 156

Query: 555 HHQRTDRREYSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKMGRKKVTAVHK 725
             +     EYS +EHE +PGVV+ +K+IT A SER+ ++AF YA + G+  +T VHK
Sbjct: 157 LIRENTEGEYSGIEHEVIPGVVQSIKLITRAASERVIRYAFQYARQTGKNNITVVHK 213


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +3

Query: 255 PELVYAVQEVFKAASIPVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFS 434
           P    A+Q++    S P+D  + F  ++N +LS   +D+V S A+ K   K I    D S
Sbjct: 533 PSKTAALQKLKFFQSRPLDGLNKFSKKINISLSGVQKDIVRSDALLKFSNK-IGVVHDIS 591

Query: 435 HTGELQTLNMKLRNALDLYANVV 503
              +   LN+ +  A  L   VV
Sbjct: 592 DENQEDHLNLTVHKADFLRMRVV 614


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 398 NLVNSDRVYDVFEWCTKCWIHFRKEKGFKVHW 303
           N VN+  VY +F      WI+ R    FK+ W
Sbjct: 269 NYVNTVIVYPIFVIFVFVWIYMRHYLNFKIMW 300


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 303 PVDFESFFFSEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLRNAL 482
           P  F S      N  L     D + ++  +KI I  +LAT   + + ++ T   +L    
Sbjct: 245 PASFTSSRNKRSNERLFGMTSDSLQTVTPDKIAILDLLATQSIASSTDMLTAFRELTQDF 304

Query: 483 DLYAN 497
            +YA+
Sbjct: 305 PIYAH 309


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 401 TNLVNSDRVYDVFEWCTKCW-IHFRKEKGFKVHWNAG 294
           T L++ + ++++F  CTK W +H +K+   K++ + G
Sbjct: 355 TPLLSQNDLWNIFFLCTKFWSLHSKKQDILKLYSDLG 391


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 555 HHQRTDRREYSALEHESVPGVVECLKIITAAKSER 659
           H    DRR Y  +  + VPGV E +  +T  K E+
Sbjct: 62  HEGIPDRRAYVIVLEKEVPGVFEGIVNLTTGKIEK 96


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 330 SEVNPTLSAPLEDVVNSIAVNKICIKGILATPDFSHTGELQTLNMKLRNALDLY 491
           S++N    A LED       N +C++  +A    S    LQ   +K R+ L  Y
Sbjct: 541 SQLNVFTKASLEDKQKKEKYNLLCVRSCIAIDSISWISSLQ--GVKFRSKLMAY 592


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 719 DGGHLLAAHLHGVVESEFRNTLGFRCGDDLQTLHHAGN 606
           DGG L  A ++G VE   R T   RC       HH G+
Sbjct: 212 DGGFLAIARVNGFVEIWNRKTKNNRCD---YKFHHDGD 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,281
Number of Sequences: 5004
Number of extensions: 70143
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)