Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0896.Seq
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.044
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 39/49 (79%), Positives = 42/49 (85%)
 Frame = +3

Query: 579 EYSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKMGRKKVTAVHK 725
           EY++LEHESVPGVVE LKIIT  KS+RIAKFAFDYA K  RKKVT VHK
Sbjct: 126 EYTSLEHESVPGVVEMLKIITRRKSQRIAKFAFDYATKHNRKKVTCVHK 174



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 484 IFTLTWYSESLPNVKCRHQDVDCIIIREQTE-ESTQL 591
           +F    +  SLP +K RH ++D +IIREQTE E T L
Sbjct: 94  LFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSL 130



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +1

Query: 142 SSVTTEKNVCYAPFGALQPRATKEGRIKCTLIPGDGVGLSLSTLYKK 282
           S+ T E +   APFG         GR   TLIPGDGVG  L    K+
Sbjct: 49  STTTEESDDLTAPFG---------GRHTVTLIPGDGVGPELVNCVKQ 86


>SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 552 HHHQRTDRREYSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKMGRKKVTAVHK 725
           HHH +TD +E   ++ ES+   +E  + +    S+   ++A +Y V   RK V  +H+
Sbjct: 135 HHHIKTDSQERCQIDVESIKTGLEIAEQVNPMDSDSEEEYATEYEVTDLRKSVCILHR 192


>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 282 VFKAASIPVDFESFFFSEVNPTLSAPLEDV 371
           VFK A+ P  F  F   E+NPTL A   D+
Sbjct: 216 VFKIANCPRAFVDFSKGEINPTLEARRSDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,912,887
Number of Sequences: 59808
Number of extensions: 549215
Number of successful extensions: 1353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)