Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0890.Seq
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    25   0.72 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   0.95 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.95 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.9  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.7  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 569 RDLVTNGHFNNVPG--NNFLGTVFCTPDLSPL-MTLPISGSY 453
           +D  + G F ++    N FLG  F  P LSPL  TL ++  Y
Sbjct: 235 KDFPSPGGFPSIHNSINPFLGQGFAVPGLSPLGHTLSMNHKY 276


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 513 AKEIVPGDVVEVSVGDKIPADI 578
           A  ++PG  ++V  GDK+  D+
Sbjct: 167 ANRMIPGPSIQVCEGDKVVIDV 188


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 513 AKEIVPGDVVEVSVGDKIPADI 578
           A  ++PG  ++V  GDK+  D+
Sbjct: 167 ANRMIPGPSIQVCEGDKVVIDV 188


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 284 KILTKRSSNCPRLTAIYFCLPP*AVHWV 201
           KILT+ S  C  L+ ++ C    A+ W+
Sbjct: 76  KILTQSSFECIHLSVLHKCYDYDAIPWL 103


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 525 VPGDVVEVSVGDKIPAD-IRLIKIYSTTI 608
           +PG  VEV +GD++  D +  +   STTI
Sbjct: 105 MPGPSVEVCLGDEVIIDVVNHLSSDSTTI 133


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 119 EEVLKYFGTDPDKGLSPDQIKRNQEKYGP 205
           EEV + +     KGL  ++IK   +KY P
Sbjct: 18  EEVAQVWEQTLQKGLDTEEIKDLLQKYPP 46


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 578 SPYQNLLHHNP 610
           S +Q +LHHNP
Sbjct: 341 SDHQAMLHHNP 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,477
Number of Sequences: 336
Number of extensions: 2802
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)