Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0890.Seq
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 49 7e-07
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 47 2e-06
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 43 3e-05
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 40 4e-04
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 34 0.016
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.063
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 28 1.4
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 3.1
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.5
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 26 5.5
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 25 7.2
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.2
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 9.5
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 9.5
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.5
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 9.5
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 48.8 bits (111), Expect = 7e-07
Identities = 20/43 (46%), Positives = 35/43 (81%)
Frame = +3
Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 641
A ++VPGD+V + +GD++PAD+R+++ +T + ID+S LTGE+
Sbjct: 133 ASKLVPGDLVILQIGDRVPADLRIVE--ATELEIDESNLTGEN 173
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +3
Query: 522 IVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVI 653
+VPGDVV + GD +PAD+RL++ + D+++LTGES+ VI
Sbjct: 139 LVPGDVVVLKTGDVVPADLRLVE--TVNFETDEALLTGESLPVI 180
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 116 VEEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVL 253
+++V F T GL+ ++ + +YG N L + G S W+++L
Sbjct: 15 IKDVESEFLTSIPNGLTHEEAQNRLSEYGENRLEADSGVSAWKVLL 60
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +3
Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 650
A EIVPGD++ + G PAD RLI +++DQS +TGES++V
Sbjct: 279 ASEIVPGDILHLDEGTICPADGRLI-TKDCFLQVDQSAITGESLAV 323
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 119 EEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSI 238
EE+L+ TDP GL+ +++ ++KYG N++ E+ +I
Sbjct: 163 EELLE---TDPKYGLTESEVEERKKKYGLNQMKEEKTNNI 199
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +3
Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 650
A E+VPGD++++ G I AD R++ +++DQS +TGES++V
Sbjct: 191 ANEVVPGDILKLDEGTIICADGRVV-TPDVHLQVDQSAITGESLAV 235
Score = 32.7 bits (71), Expect = 0.048
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 367 VILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKTVPRKLFPGTLLK 546
VI +L+ NAVVG QE A S ++ LK+ VIR + V + ++ PG +LK
Sbjct: 144 VICALLMLNAVVGFVQEYQAGSIVDELKKSLALKAVVIR--EGQVHELEANEVVPGDILK 201
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +3
Query: 519 EIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 650
++V GDV+ V GD +P D LI+ S + +D+S +TGE+ ++
Sbjct: 331 DLVVGDVLFVEAGDVVPVDGVLIE--SNNLVLDESAMTGETDNI 372
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.3 bits (70), Expect = 0.063
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -1
Query: 488 SPLMTLPISGSYSFKASMADSAFLSCHTPTTALAIRISKITK-GSTKAENASSCSSNKAN 312
S + + P+S + S A+ A S LS TTA + + ++ ST A +ASS N
Sbjct: 418 SSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVN 477
Query: 311 TNEIIAANSKILTKRSS 261
+ +A+S LT +S
Sbjct: 478 STTATSASSTPLTSVNS 494
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 483 RRQIWSTKNRAKEIVPGDVVEVSVGDK--IPADIRLIKIYSTTIRIDQSILTGESVSV 650
R W T + ++V GDV E+S + PAD L+ S +++S+LTGES+ V
Sbjct: 393 RDGFW-TSISSTDLVIGDVFEISDPELTIFPADALLL---SGDCIVNESMLTGESIPV 446
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 516 KEIVPGDVVEVSVGDKIPADIRLI 587
K++ GD V+V D+IPADI +I
Sbjct: 295 KDVRVGDFVKVMDNDEIPADIVII 318
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKI---YSTTIRIDQSILTGES 641
A+ I GDVV ++ +IPAD+ L++ IR DQ L GE+
Sbjct: 184 AQNIQAGDVVYIAKDQRIPADMILLETTVGNEAFIRTDQ--LDGET 227
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 149 PDKGLSPDQIKRNQEKYGPNELPTEEGKSI 238
PD L Q K N+E PN+LP +E K +
Sbjct: 195 PDDQLPKPQPK-NEEPAAPNDLPKQEEKEL 223
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 374 KITKGSTKAENASSCSSNKANTNEIIAANSKILTKRSSNCP 252
++ ++AEN SS K+N+ E A K+ +R + P
Sbjct: 85 ELESAESEAENDEESSSQKSNSKESHAQRKKLQKERKAMKP 125
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 516 KEIVPGDVVEVSVGDKIPADIRLI 587
K ++ GD+V+V + IPAD+ ++
Sbjct: 325 KSLLVGDIVKVLADEAIPADLLIL 348
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESV 644
A ++V GD++ S D + I ++S++ +D+S++TGESV
Sbjct: 271 ADDLVIGDLLYFSNLDLKTCPVDGI-LFSSSCLLDESMVTGESV 313
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 313 LALFEEHEDAFSAFVEPFVILLILI--ANAVVGVWQERNAESAIEALKEYE 459
+A + HED A F L++ A+AVV VW++ E + +E E
Sbjct: 584 VATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWKDVTEEYIAKQAEELE 634
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/78 (20%), Positives = 33/78 (42%)
Frame = +3
Query: 396 CSRSMAGKKRRICHRSFKRIRT*NG*SHKRRQIWSTKNRAKEIVPGDVVEVSVGDKIPAD 575
C+ A KR+ C ++ R + ++ R+QI R V + ++ +
Sbjct: 978 CAYDYASDKRKFCKENYLREKALEEVTNLRKQIIGLLKRYMVRVEKEFFKLQLKPPTSVQ 1037
Query: 576 IRLIKIYSTTIRIDQSIL 629
I+ ++ + + IDQ L
Sbjct: 1038 IKALRQFIASAYIDQVAL 1055
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 51 GKIVQTDGNIVIPPWRTLTRNPWKK--S*NILAQTQTKALVQTK*KGTK 191
G+ VQTD N +P ++ T P + S ++ T+ +V T K TK
Sbjct: 1178 GENVQTDSNAAVPSSKSSTEEPNESVLSGHLDLDTEASPVVSTIEKTTK 1226
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 211 FIGSIFFLVPF-YLVWTKAFVWVCAKIF 131
F G +F VP Y+V F ++C K+F
Sbjct: 202 FEGLFWFFVPVCYVVCNDVFAYLCGKMF 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,486
Number of Sequences: 5004
Number of extensions: 47493
Number of successful extensions: 180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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