BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0890.Seq (653 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 49 7e-07 SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 47 2e-06 SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 43 3e-05 SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 40 4e-04 SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 34 0.016 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.063 SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 28 1.4 SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 3.1 SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.5 SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 26 5.5 SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 25 7.2 SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.2 SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.2 SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 9.5 SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 9.5 SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.5 SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 9.5 >SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 899 Score = 48.8 bits (111), Expect = 7e-07 Identities = 20/43 (46%), Positives = 35/43 (81%) Frame = +3 Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 641 A ++VPGD+V + +GD++PAD+R+++ +T + ID+S LTGE+ Sbjct: 133 ASKLVPGDLVILQIGDRVPADLRIVE--ATELEIDESNLTGEN 173 >SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1037 Score = 47.2 bits (107), Expect = 2e-06 Identities = 21/44 (47%), Positives = 32/44 (72%) Frame = +3 Query: 522 IVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVI 653 +VPGDVV + GD +PAD+RL++ + D+++LTGES+ VI Sbjct: 139 LVPGDVVVLKTGDVVPADLRLVE--TVNFETDEALLTGESLPVI 180 Score = 31.5 bits (68), Expect = 0.11 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +2 Query: 116 VEEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVL 253 +++V F T GL+ ++ + +YG N L + G S W+++L Sbjct: 15 IKDVESEFLTSIPNGLTHEEAQNRLSEYGENRLEADSGVSAWKVLL 60 >SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1010 Score = 43.2 bits (97), Expect = 3e-05 Identities = 22/46 (47%), Positives = 31/46 (67%) Frame = +3 Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 650 A EIVPGD++ + G PAD RLI +++DQS +TGES++V Sbjct: 279 ASEIVPGDILHLDEGTICPADGRLI-TKDCFLQVDQSAITGESLAV 323 Score = 30.7 bits (66), Expect = 0.19 Identities = 14/40 (35%), Positives = 26/40 (65%) Frame = +2 Query: 119 EEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSI 238 EE+L+ TDP GL+ +++ ++KYG N++ E+ +I Sbjct: 163 EELLE---TDPKYGLTESEVEERKKKYGLNQMKEEKTNNI 199 >SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 919 Score = 39.5 bits (88), Expect = 4e-04 Identities = 19/46 (41%), Positives = 32/46 (69%) Frame = +3 Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 650 A E+VPGD++++ G I AD R++ +++DQS +TGES++V Sbjct: 191 ANEVVPGDILKLDEGTIICADGRVV-TPDVHLQVDQSAITGESLAV 235 Score = 32.7 bits (71), Expect = 0.048 Identities = 22/60 (36%), Positives = 32/60 (53%) Frame = +1 Query: 367 VILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKTVPRKLFPGTLLK 546 VI +L+ NAVVG QE A S ++ LK+ VIR + V + ++ PG +LK Sbjct: 144 VICALLMLNAVVGFVQEYQAGSIVDELKKSLALKAVVIR--EGQVHELEANEVVPGDILK 201 >SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1292 Score = 34.3 bits (75), Expect = 0.016 Identities = 17/44 (38%), Positives = 29/44 (65%) Frame = +3 Query: 519 EIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 650 ++V GDV+ V GD +P D LI+ S + +D+S +TGE+ ++ Sbjct: 331 DLVVGDVLFVEAGDVVPVDGVLIE--SNNLVLDESAMTGETDNI 372 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 32.3 bits (70), Expect = 0.063 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = -1 Query: 488 SPLMTLPISGSYSFKASMADSAFLSCHTPTTALAIRISKITK-GSTKAENASSCSSNKAN 312 S + + P+S + S A+ A S LS TTA + + ++ ST A +ASS N Sbjct: 418 SSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVN 477 Query: 311 TNEIIAANSKILTKRSS 261 + +A+S LT +S Sbjct: 478 STTATSASSTPLTSVNS 494 >SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3|||Manual Length = 1315 Score = 27.9 bits (59), Expect = 1.4 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = +3 Query: 483 RRQIWSTKNRAKEIVPGDVVEVSVGDK--IPADIRLIKIYSTTIRIDQSILTGESVSV 650 R W T + ++V GDV E+S + PAD L+ S +++S+LTGES+ V Sbjct: 393 RDGFW-TSISSTDLVIGDVFEISDPELTIFPADALLL---SGDCIVNESMLTGESIPV 446 >SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1402 Score = 26.6 bits (56), Expect = 3.1 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 516 KEIVPGDVVEVSVGDKIPADIRLI 587 K++ GD V+V D+IPADI +I Sbjct: 295 KDVRVGDFVKVMDNDEIPADIVII 318 >SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosaccharomyces pombe|chr 1|||Manual Length = 1033 Score = 25.8 bits (54), Expect = 5.5 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = +3 Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKI---YSTTIRIDQSILTGES 641 A+ I GDVV ++ +IPAD+ L++ IR DQ L GE+ Sbjct: 184 AQNIQAGDVVYIAKDQRIPADMILLETTVGNEAFIRTDQ--LDGET 227 >SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor complex subunit Spp27|Schizosaccharomyces pombe|chr 3|||Manual Length = 233 Score = 25.8 bits (54), Expect = 5.5 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 149 PDKGLSPDQIKRNQEKYGPNELPTEEGKSI 238 PD L Q K N+E PN+LP +E K + Sbjct: 195 PDDQLPKPQPK-NEEPAAPNDLPKQEEKEL 223 >SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 642 Score = 25.4 bits (53), Expect = 7.2 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = -1 Query: 374 KITKGSTKAENASSCSSNKANTNEIIAANSKILTKRSSNCP 252 ++ ++AEN SS K+N+ E A K+ +R + P Sbjct: 85 ELESAESEAENDEESSSQKSNSKESHAQRKKLQKERKAMKP 125 >SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1367 Score = 25.4 bits (53), Expect = 7.2 Identities = 9/24 (37%), Positives = 17/24 (70%) Frame = +3 Query: 516 KEIVPGDVVEVSVGDKIPADIRLI 587 K ++ GD+V+V + IPAD+ ++ Sbjct: 325 KSLLVGDIVKVLADEAIPADLLIL 348 >SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1096 Score = 25.4 bits (53), Expect = 7.2 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3 Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESV 644 A ++V GD++ S D + I ++S++ +D+S++TGESV Sbjct: 271 ADDLVIGDLLYFSNLDLKTCPVDGI-LFSSSCLLDESMVTGESV 313 >SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13 |Schizosaccharomyces pombe|chr 3|||Manual Length = 777 Score = 25.0 bits (52), Expect = 9.5 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = +1 Query: 313 LALFEEHEDAFSAFVEPFVILLILI--ANAVVGVWQERNAESAIEALKEYE 459 +A + HED A F L++ A+AVV VW++ E + +E E Sbjct: 584 VATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWKDVTEEYIAKQAEELE 634 >SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1183 Score = 25.0 bits (52), Expect = 9.5 Identities = 16/78 (20%), Positives = 33/78 (42%) Frame = +3 Query: 396 CSRSMAGKKRRICHRSFKRIRT*NG*SHKRRQIWSTKNRAKEIVPGDVVEVSVGDKIPAD 575 C+ A KR+ C ++ R + ++ R+QI R V + ++ + Sbjct: 978 CAYDYASDKRKFCKENYLREKALEEVTNLRKQIIGLLKRYMVRVEKEFFKLQLKPPTSVQ 1037 Query: 576 IRLIKIYSTTIRIDQSIL 629 I+ ++ + + IDQ L Sbjct: 1038 IKALRQFIASAYIDQVAL 1055 >SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccharomyces pombe|chr 3|||Manual Length = 1284 Score = 25.0 bits (52), Expect = 9.5 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 51 GKIVQTDGNIVIPPWRTLTRNPWKK--S*NILAQTQTKALVQTK*KGTK 191 G+ VQTD N +P ++ T P + S ++ T+ +V T K TK Sbjct: 1178 GENVQTDSNAAVPSSKSSTEEPNESVLSGHLDLDTEASPVVSTIEKTTK 1226 >SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 439 Score = 25.0 bits (52), Expect = 9.5 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -2 Query: 211 FIGSIFFLVPF-YLVWTKAFVWVCAKIF 131 F G +F VP Y+V F ++C K+F Sbjct: 202 FEGLFWFFVPVCYVVCNDVFAYLCGKMF 229 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,468,486 Number of Sequences: 5004 Number of extensions: 47493 Number of successful extensions: 180 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 176 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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