Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0890.Seq
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 48 9e-06
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 43 2e-04
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 34 0.088
SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_3202| Best HMM Match : AFP (HMM E-Value=2.9) 32 0.47
SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008) 29 2.5
SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_19875| Best HMM Match : zf-ZPR1 (HMM E-Value=1.7) 28 7.6
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45) 28 7.6
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07) 28 7.6
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026) 28 7.6
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +1
Query: 310 VLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAES 432
VLALFEE ED +AFVEP VIL+ILI NA++GVWQ N S
Sbjct: 191 VLALFEEGEDQTTAFVEPIVILVILILNAIIGVWQGTNIAS 231
>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1154
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +2
Query: 101 AHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLDNS 262
A +VEEVLK F TD +GLS D+I+R + +G NE E K++W+ LD +
Sbjct: 37 ASAMAVEEVLKQFNTDQSRGLSNDEIERRRMLHGWNEFDVVEEKALWKKYLDQA 90
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/43 (48%), Positives = 34/43 (79%)
Frame = +3
Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 641
A+++V GD++ V++GD++PADIR+I+ S ++D S LTGES
Sbjct: 149 AEQVVIGDIIFVAIGDRVPADIRVIE--SKGFKVDNSSLTGES 189
>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1003
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +3
Query: 513 AKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 641
A+ +V GDVV V GD++P DIR+++ S ++D S LTGES
Sbjct: 181 AENLVIGDVVSVKGGDRLPGDIRILECKS--FKVDNSSLTGES 221
>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 519 EIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 641
EIV GD+ ++ GD +PAD + + S +++D+S LTGES
Sbjct: 197 EIVVGDLCQIKYGDLLPAD--GVVVQSNDLKVDESSLTGES 235
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 101 AHTKSVEEVLKYFGTDPDKGLS--PDQIKRNQEKYGPNELPTEEGKSIWQLVLD 256
A T + +++ T +KG+S P+ I+ + +GPN +P + K+ W+ ++D
Sbjct: 51 ASTGGLHGLVRKLHTSTEKGISGFPEDIENRKRVFGPNVIPPKPPKTFWEFLVD 104
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 34.3 bits (75), Expect = 0.088
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = -1
Query: 452 SFKASMADSAFLSCHTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANSKILT 273
+F S +A + ++P A A+ I+++ STK A + + N+N+I AA S +T
Sbjct: 97 AFMNSSQIAAAVFMNSPKIAAAVSITEVFMNSTKIAAAVNITEVFMNSNKIAAAVS--IT 154
Query: 272 KRSSNCPRLTAIYFCLPP 219
+ NC ++ A F P
Sbjct: 155 EVFMNCTKIAAAVFMNSP 172
>SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1173
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 534 DVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSV 650
DV++V G KIP D R+I+ T D+S++TGES+ V
Sbjct: 825 DVLKVVPGAKIPVDGRVIE---GTSMADESLITGESMPV 860
>SB_3202| Best HMM Match : AFP (HMM E-Value=2.9)
Length = 460
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = -1
Query: 545 FNNVPGNN--FLGTVFCTPDLSPLMTLPISGSYSFKASMADSAFLSCHTPTT---ALAIR 381
FN + G N +G++ CT +S ++ +GS + K SM+ +SC + +++ +
Sbjct: 382 FNELQGFNESCMGSISCTGSMSYKGSMSCTGSTNCKGSMSCKGSMSCKGSMSCKGSMSCK 441
Query: 380 ISKITKGSTKAENASSC 330
KGS + +SSC
Sbjct: 442 GLMSCKGSMSCKGSSSC 458
>SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)
Length = 659
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 510 RAKEIVPGDVVEVSV-GDKIPADIRLIKIYSTTIRIDQSILTGESVSV 650
++ ++VPGDV+ + G + D LI S +++S+LTGESV V
Sbjct: 176 QSTDLVPGDVIVIPAQGATMHCDAALI---SGNCIVNESMLTGESVPV 220
>SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1138
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 516 KEIVPGDVVEVSVGDKIPADIRLI 587
K++V GD++++S + IPADI L+
Sbjct: 138 KDVVVGDIIKLSSNEIIPADILLL 161
>SB_19875| Best HMM Match : zf-ZPR1 (HMM E-Value=1.7)
Length = 323
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 77 HSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 208
H N MED + +EEV PD+ +P + +N+ K GPN
Sbjct: 261 HKNWVMEDMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 302
>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
Length = 623
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/89 (21%), Positives = 34/89 (38%)
Frame = -1
Query: 518 LGTVFCTPDLSPLMTLPISGSYSFKASMADSAFLSCHTPTTALAIRISKITKGSTKAENA 339
L + CTP SP+ + + S K +S L H+ T + G +
Sbjct: 502 LSSPICTPSGSPISSSVSLAALSGKVHETNSVILRTHSQTR------ESVLIGDHNVNDF 555
Query: 338 SSCSSNKANTNEIIAANSKILTKRSSNCP 252
+C++ ++N AN+ + T P
Sbjct: 556 KTCNNTHGHSNNKRPANNNVTTSAVVTMP 584
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/85 (22%), Positives = 42/85 (49%)
Frame = -1
Query: 512 TVFCTPDLSPLMTLPISGSYSFKASMADSAFLSCHTPTTALAIRISKITKGSTKAENASS 333
TV T ++ +T + + + A++ +A + T T + + ++ S N++S
Sbjct: 369 TVTATVTVTVTVTATATATVTATATVTVTAAAARATATVTVTVTVTATVHNSNS--NSNS 426
Query: 332 CSSNKANTNEIIAANSKILTKRSSN 258
S++ +N+N +NSK + +SN
Sbjct: 427 NSNSNSNSNSNSNSNSKSNSNSNSN 451
>SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)
Length = 656
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 392 LAIRISKITKGSTKAENASSCSSNKANTNEIIAANSKILTKRSSNCPR 249
+ I+ +ITK T A SS S K + + +SKI R S+C R
Sbjct: 382 ILIKRVQITKNETGASGRSS-SREKRSGQSVSETSSKIADPRKSDCHR 428
>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
Length = 766
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 446 KASMADSAFLSCHTPTTALAIRISKITKGSTKAENASSCSSNKANTN 306
K M+DSA + A +I KITK ST A +CSS+ + T+
Sbjct: 67 KRCMSDSARNASDFKAEHKAYKIPKITKSSTPAR--PNCSSHSSKTS 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,288,184
Number of Sequences: 59808
Number of extensions: 350175
Number of successful extensions: 1073
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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