Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0890.Seq
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.12 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.64 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 307 FVLALFEEHEDAFSAFVEPFVILLILIAN 393
           +V+ L +EH+DAF   V  F IL  +  N
Sbjct: 467 YVIILDDEHDDAFIGIVNQFHILQFITKN 495


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 558 DKIPADIRLIKIYSTTIR 611
           D+IP D+RL +I STT +
Sbjct: 542 DRIPIDVRLSEIASTTAK 559


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 353 KAENASSCSSNKANTNEIIAANSKILTKRSSNCPRLT 243
           K E  S    NK+  N  + ++S +   R +NC   T
Sbjct: 18  KCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYAT 54


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 134 ILRLLPRISCERPPWWNYYVAVSLNYFSDSVGK 36
           +L +L  ++  RP WW ++ A S    + + GK
Sbjct: 15  LLTILIFVTSHRPAWW-FWTATSHEASAPAEGK 46


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 170 DQIKRNQEKYGPNELPTEEGKSIWQ 244
           ++ ++ +E+Y P ELP +E KS+++
Sbjct: 144 EEAQKPKEQYIPPELPNDE-KSLFE 167


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 122 EVLKYFGTDPDKGLSPDQIKRNQEKYGP 205
           E+LKY      +GLS D+ K ++   GP
Sbjct: 510 ELLKYLRKVDFEGLSGDKFKFDKNGDGP 537


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +1

Query: 409 WQERNAESAIEALKEYEPEMGK 474
           W + + ++A+EAL+ ++  + K
Sbjct: 411 WTQEDMDAALEALRNHDMSLTK 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,299
Number of Sequences: 438
Number of extensions: 3503
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)