Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0888.Seq
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.3  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 150 H*SHKPVLQHPKHHTP 197
           H  H    QHP+HH P
Sbjct: 166 HMGHHMQEQHPQHHQP 181


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 150 H*SHKPVLQHPKHHTP 197
           H  H    QHP+HH P
Sbjct: 168 HMGHHMQEQHPQHHQP 183


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 11  LHAFTQRQQLQTARQELSHALYQHDAACR 97
           L  +  R Q+    Q+   ++YQHD   R
Sbjct: 485 LPPYPNRTQITEVTQQTEPSIYQHDQLLR 513


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 388 SVPGILSLDI--NPSDHSKLLTGGNDRNATVFNKDTEQVVAIPKVT 519
           S P +LSL +  N      L   GN  +    N D   + A+P VT
Sbjct: 464 STPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLSAVPIVT 509


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 512 RSHQESHQGYIPSG*GYGHHSFTRSYH 592
           ++H+ +H G  P      H  FTR +H
Sbjct: 151 QNHERTHTGEKPFECQECHKRFTRDHH 177


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 500 WPFQRSHQESHQGY 541
           +PF+  HQ S+ GY
Sbjct: 74  YPFRPMHQNSYTGY 87


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 202 GVSRQCGSNRHVCGRGVS 255
           G S +CG   H+C   +S
Sbjct: 149 GFSYKCGIQYHICNTVIS 166


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 202 GVSRQCGSNRHVCGRGVS 255
           G S +CG   H+C   +S
Sbjct: 145 GFSYKCGIQYHICNTVIS 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,037
Number of Sequences: 336
Number of extensions: 3474
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)