Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0888.Seq
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 80  HDAACRVIARLTKEVTAAREALATLKPQAGIAAP 181
           H   CR + RLT++V  +  A   +    G+  P
Sbjct: 205 HGYRCRTMHRLTRQVVVSSVANVRIADHRGVMPP 238


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 80  HDAACRVIARLTKEVTAAREALATLKPQAGIAAP 181
           H   CR + RLT++V  +  A   +    G+  P
Sbjct: 205 HGYRCRTMHRLTRQVVVSSVANVRIADHRGVMPP 238


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 569 DDRILIRMVYNPGDFLGVTFGMATTCSVSLLKTVALRSFPPV 444
           DD   + ++Y PGD LGV     +    ++LK V     P V
Sbjct: 742 DDIASMEILYKPGDHLGVFACNRSELVEAILKRVQTPFDPDV 783


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 81  CWYKA*LNSCLAVCNCC 31
           C Y+A    C A+C+CC
Sbjct: 737 CRYEA---HCFALCHCC 750


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 442 LTGGNDRNATVFNKDTEQVVAIPKVTPRKS 531
           LTGGN  NA   N+D+    A     P  S
Sbjct: 247 LTGGNSGNAAGNNEDSSDSGAAASDRPPAS 276


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/35 (28%), Positives = 12/35 (34%)
 Frame = +1

Query: 70  LVPTRRSVSCDSPTHKGSDSGARGPRHTEATSRYC 174
           L+       C S  H     GA    H E  +R C
Sbjct: 292 LICVTTGTKCVSGEHLSVSGGALNDCHAEVVARRC 326


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 275 HSRRNGSXXX--APCPMYCWHQSRSEHSSLLHRILVFILPVFLVSYLWTSI 421
           +  +NGS     A C M  W  +  EH+  +  +L F+LP+ ++  L+  I
Sbjct: 197 YENKNGSVILDTARCSMK-W--TLIEHAFEISTMLFFVLPMTIIIVLYILI 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,734
Number of Sequences: 438
Number of extensions: 3643
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)