Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0888.Seq
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 73 2e-13
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 73 2e-13
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 73 2e-13
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 41 6e-04
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 41 8e-04
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 41 8e-04
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 41 8e-04
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 41 8e-04
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 41 8e-04
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 40 0.001
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 39 0.002
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 39 0.002
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 37 0.009
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 37 0.012
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 36 0.016
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 36 0.016
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 36 0.022
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 36 0.022
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 36 0.022
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 36 0.022
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 36 0.028
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 36 0.028
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 36 0.028
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 36 0.028
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 36 0.028
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 36 0.028
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 36 0.028
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 36 0.028
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 36 0.028
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 35 0.038
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 35 0.038
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 35 0.038
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 35 0.038
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 35 0.038
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 35 0.050
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 34 0.066
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 34 0.066
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 34 0.087
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 33 0.11
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 33 0.11
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 33 0.15
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 33 0.15
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 33 0.15
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 33 0.20
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 33 0.20
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 32 0.26
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 32 0.26
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 32 0.26
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 32 0.26
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 32 0.35
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 32 0.35
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 32 0.35
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 32 0.35
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 32 0.35
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 32 0.35
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 32 0.35
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 32 0.35
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 31 0.46
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 31 0.46
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 31 0.46
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 31 0.46
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 31 0.61
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 31 0.61
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 31 0.61
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 31 0.61
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 31 0.61
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 31 0.61
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 31 0.81
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 30 1.1
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 30 1.1
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 30 1.1
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 30 1.4
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 30 1.4
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 30 1.4
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 30 1.4
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 30 1.4
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 29 1.9
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 1.9
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 29 1.9
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 29 1.9
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 29 1.9
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 29 2.5
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 2.5
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 2.5
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 29 2.5
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 29 2.5
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 29 2.5
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 2.5
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 2.5
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 29 2.5
At5g24740.1 68418.m02920 expressed protein 29 3.3
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 29 3.3
At4g22790.1 68417.m03289 MATE efflux family protein contains Pfa... 29 3.3
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 29 3.3
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 29 3.3
At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa... 29 3.3
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 29 3.3
At5g62020.1 68418.m07785 heat shock factor protein, putative (HS... 28 4.3
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 28 4.3
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 28 4.3
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 28 4.3
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 28 4.3
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 4.3
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 28 5.7
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 28 5.7
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 28 5.7
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 28 5.7
At2g17390.1 68415.m02008 ankyrin repeat family protein contains ... 28 5.7
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 28 5.7
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 28 5.7
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 27 7.5
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 27 7.5
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 27 7.5
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 27 7.5
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 27 7.5
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 27 10.0
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 27 10.0
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 27 10.0
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/61 (63%), Positives = 44/61 (72%)
Frame = +2
Query: 5 LMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIAAPQ 184
LML F QQL TARQELSHALYQHD+ACRVIARL KE AR+ LA ++ AAP+
Sbjct: 83 LMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKERDEARQLLAEVERHIP-AAPE 141
Query: 185 A 187
A
Sbjct: 142 A 142
Score = 47.6 bits (108), Expect = 7e-06
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +1
Query: 274 ALTQERKXXXXXLPYVLLAPEQIRAFLTLASHPGLHSASVPGILSLDINPSDHSK--LLT 447
AL+Q+RK +P L + + + F L+SHP LH + PGI S+DI HSK + T
Sbjct: 186 ALSQKRKKRQ--IPQTLASIDTLERFTQLSSHP-LHKTNKPGICSMDIL---HSKDVIAT 239
Query: 448 GGNDRNATVFNKDTEQVVA 504
GG D A +F++ + Q+++
Sbjct: 240 GGVDATAVLFDRPSGQILS 258
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVP 611
GH+KKVT V + D D V+TAS D T+R+W P
Sbjct: 262 GHSKKVTSVKFVGDSDLVLTASADKTVRIWRNP 294
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/61 (63%), Positives = 44/61 (72%)
Frame = +2
Query: 5 LMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIAAPQ 184
LML F QQL TARQELSHALYQHD+ACRVIARL KE AR+ LA ++ AAP+
Sbjct: 83 LMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKKERDEARQLLAEVERHIP-AAPE 141
Query: 185 A 187
A
Sbjct: 142 A 142
Score = 47.6 bits (108), Expect = 7e-06
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +1
Query: 274 ALTQERKXXXXXLPYVLLAPEQIRAFLTLASHPGLHSASVPGILSLDINPSDHSK--LLT 447
AL+Q+RK +P L + + + F L+SHP LH + PGI S+DI HSK + T
Sbjct: 186 ALSQKRKKRQ--IPQTLASIDTLERFTQLSSHP-LHKTNKPGICSMDIL---HSKDVIAT 239
Query: 448 GGNDRNATVFNKDTEQVVA 504
GG D A +F++ + Q+++
Sbjct: 240 GGVDATAVLFDRPSGQILS 258
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVP 611
GH+KKVT V + D D V+TAS D T+R+W P
Sbjct: 262 GHSKKVTSVKFVGDSDLVLTASADKTVRIWRNP 294
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/61 (63%), Positives = 44/61 (72%)
Frame = +2
Query: 2 ALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIAAP 181
+LML F QQL TARQELSHALYQHDAACRVIARL KE +R+ LA + Q AAP
Sbjct: 82 SLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRQLLAEAERQLP-AAP 140
Query: 182 Q 184
+
Sbjct: 141 E 141
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +1
Query: 274 ALTQERKXXXXXLPYVLLAPEQIRAFLTLASHPGLHSASVPGILSLDINPSDHSK--LLT 447
AL+Q+RK +P L + + + F L+SHP LH + PGI S+DI HSK + T
Sbjct: 186 ALSQQRKKRQ--IPKTLASVDALEKFTQLSSHP-LHKTNKPGIFSMDIL---HSKDVIAT 239
Query: 448 GGNDRNATVFNKDTEQVVA 504
GG D A +F++ + Q+++
Sbjct: 240 GGIDTTAVLFDRPSGQILS 258
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
GH+KKVT + + D D V+TAS D T+R+W
Sbjct: 262 GHSKKVTSIKFVGDTDLVLTASSDKTVRIW 291
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GHT V+ V +HP+ +IT S D T+R+W+ T
Sbjct: 226 EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 516 HTKKVTRVIYHP--DEDTVITASPDHTIRVWNVPT 614
H K V V Y D+ +IT S DHT +VW+ T
Sbjct: 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
KGH VT + + P+ + +ITAS D +IRVWN+
Sbjct: 286 KGHKSAVTWLCFSPNSEQIITASKDGSIRVWNI 318
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 40.7 bits (91), Expect = 8e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GHT V+ V +HP+ +IT S D T+R+W+ T
Sbjct: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 516 HTKKVTRVIYHP--DEDTVITASPDHTIRVWNVPT 614
H K V V Y D+ +IT S DHT +VW+ T
Sbjct: 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 40.7 bits (91), Expect = 8e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GHT V+ V +HP+ +IT S D T+R+W+ T
Sbjct: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 516 HTKKVTRVIYHP--DEDTVITASPDHTIRVWNVPT 614
H K V V Y D+ +IT S DHT +VW+ T
Sbjct: 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 40.7 bits (91), Expect = 8e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GHT V+ V +HP+ +IT S D T+R+W+ T
Sbjct: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 516 HTKKVTRVIYHP--DEDTVITASPDHTIRVWNVPT 614
H K V V Y D+ +IT S DHT +VW+ T
Sbjct: 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 40.7 bits (91), Expect = 8e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GHT V+ V +HP+ +IT S D T+R+W+ T
Sbjct: 226 EGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATT 260
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 516 HTKKVTRVIYHP--DEDTVITASPDHTIRVWNVPT 614
H K V V Y D+ +IT S DHT +VW+ T
Sbjct: 184 HLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
+ H VT V YHP ED ++T+S D TIRVW
Sbjct: 267 RAHDLVVTSVSYHPKEDCMLTSSVDGTIRVW 297
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
KGH V ++ D + +T D TIR+WN
Sbjct: 15 KGHEGAVLAARFNGDGNYALTCGKDRTIRLWN 46
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
+GH +V V ++ V++A D ++RVW+
Sbjct: 99 RGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWD 130
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH V +HP ED V++AS D T+RVW++
Sbjct: 133 GHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
Score = 35.9 bits (79), Expect = 0.022
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
+GH V+ V++H +D +++ S D +IRVW+
Sbjct: 245 RGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
Score = 33.9 bits (74), Expect = 0.087
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GH + V +H + +++AS D TIR+WN
Sbjct: 91 GHLDYIRTVQFHHENPWIVSASDDQTIRIWN 121
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH V +HP ED V++AS D T+RVW++
Sbjct: 133 GHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
Score = 35.9 bits (79), Expect = 0.022
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
+GH V+ V++H +D +++ S D +IRVW+
Sbjct: 245 RGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GH + V +H + +++AS D TIR+WN
Sbjct: 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GHT +V + PD T++T + D T+R WNV
Sbjct: 463 GHTYRVLYLAVSPDGQTIVTGAGDETLRFWNV 494
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
+GHT V I+ D +ITAS D T++VW+ T+
Sbjct: 344 RGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTT 379
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 516 HTKKVTRVIYHPDEDTVITASPDHTIRVW 602
H K V + +HP + + T S D T+++W
Sbjct: 481 HEKDVIGITHHPHRNLLATYSEDCTMKLW 509
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GHTK V V + D +++AS D TI++WN
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASRDRTIKLWN 133
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GHTK V V + D +++AS D TI++WN
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASRDRTIKLWN 133
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GHT +V + PD TV +A+ D T+R+WNV
Sbjct: 370 GHTSRVLFMAQSPDGCTVASAAGDETLRLWNV 401
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GHT +V + PD TV +A+ D T+R+WNV
Sbjct: 353 GHTSRVLFMAQSPDGCTVASAAGDETLRLWNV 384
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 35.9 bits (79), Expect = 0.022
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
+GHT+ V V HP E+ + + S D T+R+W
Sbjct: 282 EGHTETVMNVACHPTENLIASGSLDKTVRIW 312
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GHT V ++P + +++ S D T+R+W+V T
Sbjct: 111 GHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTT 144
Score = 31.1 bits (67), Expect = 0.61
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH ++ V + D +++AS D T+++W+V T
Sbjct: 69 GHENGISDVAFSSDARFIVSASDDKTLKLWDVET 102
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDE-DTVITASPDHTIRVWNV 608
KGH +VT V + P E V TAS D T+R+WN+
Sbjct: 378 KGHDFEVTAVDWSPSEIGKVATASDDFTVRLWNI 411
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GHT+ V+ V++ P+ D + ++S DH++R W+V T
Sbjct: 270 GHTQCVSSVVW-PEHDVIYSSSWDHSVRRWDVET 302
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GHT+ V+ V++ P+ D + ++S DH++R W+V T
Sbjct: 270 GHTQCVSSVVW-PEHDVIYSSSWDHSVRRWDVET 302
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 35.5 bits (78), Expect = 0.028
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH+ +V + PD T++T + D T+R WNV
Sbjct: 426 GHSMRVLYLATSPDGQTIVTGAGDETLRFWNV 457
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GHT +V + PD TV +A+ D T+R WNV
Sbjct: 400 GHTSRVLYMAQSPDGCTVASAAGDETLRFWNV 431
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GHT +V + PD TV +A+ D T+R WNV
Sbjct: 390 GHTSRVLYMAQSPDGCTVASAAGDETLRFWNV 421
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 35.5 bits (78), Expect = 0.028
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
GH++ V V++HP D + + S D+TI++W
Sbjct: 137 GHSEDVKMVLWHPTMDVLFSCSYDNTIKIW 166
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 507 SKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
+ GH+ V + ++ D ++T S D +++W S
Sbjct: 185 NNGHSSTVWSISFNAAGDKMVTCSDDLAVKIWKTDIS 221
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 35.5 bits (78), Expect = 0.028
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH+ +V + PD T++T + D T+R WNV
Sbjct: 420 GHSYRVLYLAVSPDGQTIVTGAGDETLRFWNV 451
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
GHT+ V V +HP D + + S D+TI+VW
Sbjct: 161 GHTQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 507 SKGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
+ GH+ V + ++ D ++T S D T+++W
Sbjct: 209 NNGHSSTVWSISFNAAGDKMVTCSDDLTLKIW 240
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GHTK V V + D +++AS D TI++WN
Sbjct: 103 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 133
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = +3
Query: 498 CGHS-KGHTKKVTRVIYHPD--EDTVITASPDHTIRVWNV 608
C H +GH V+ +++HPD ++ +I+ S D T+RVW++
Sbjct: 136 CTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDL 175
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
KGH +++ V + + V+TAS D T+++W +
Sbjct: 538 KGHKRRIFSVEFSTVDQCVMTASGDKTVKIWAI 570
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
+GHT V R + D ++ D +++WNV TS
Sbjct: 580 EGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTS 615
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 498 CGHSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
C +GHT KV + + P+ + +++AS D + VWN TS
Sbjct: 58 CRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTS 97
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 498 CGHSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
C +GHT KV + + P+ + +++AS D + VWN TS
Sbjct: 58 CRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTS 97
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 35.1 bits (77), Expect = 0.038
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GHT V V ++P + +++ S D TIR+W V T
Sbjct: 125 RGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKT 159
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 35.1 bits (77), Expect = 0.038
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
KGH + + + D +++ASPD T+R W+V T
Sbjct: 93 KGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVET 127
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 34.7 bits (76), Expect = 0.050
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 504 HSKGHTKKVTRVIYHP-DEDTVITASPDHTIRVWNVPTS 617
H GH ++ I++P D IT S DH ++VW+ TS
Sbjct: 98 HENGHKYAISSAIWYPIDTGMFITGSFDHYVKVWDTNTS 136
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 34.3 bits (75), Expect = 0.066
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 492 TSCGHSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
T G GHT V V PD + T S D T+R+W++
Sbjct: 234 TLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDL 272
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 34.3 bits (75), Expect = 0.066
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GHT V + + PD+ + + S D+T+ +WN+ T
Sbjct: 115 RGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRT 149
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 33.9 bits (74), Expect = 0.087
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
KGHTK + + EDT+IT S D T RVW+V
Sbjct: 1019 KGHTKWIRSI--RMVEDTLITGSDDWTARVWSV 1049
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
+GHT ++T + + D VI++S D ++R+W+V
Sbjct: 554 RGHTDRITDLCFSEDGKWVISSSMDGSLRIWDV 586
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
K H ++ T V++ P +D + TAS D T ++W
Sbjct: 295 KDHKERATDVVFSPVDDCLATASADRTAKLW 325
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GH ++ RV +HP + T S D T R+W++ T
Sbjct: 336 EGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINT 370
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
GH KV + D + T S D TI++W
Sbjct: 506 GHESKVASLDITADSSCIATVSHDRTIKLW 535
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 504 HSKGHTKKVTRVIYHP-DEDTVITASPDHTIRVWNVPTS 617
H GH ++ I++P D IT S DH ++VW+ T+
Sbjct: 98 HENGHKYAISSAIWYPIDTGLFITGSFDHYLKVWDTNTA 136
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
+GH V V Y PD + T + D+ ++VWNV
Sbjct: 346 QGHYFDVNCVTYSPDSQLLATGADDNKVKVWNV 378
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 516 HTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
HT VT + + D ++++AS D T+R W+
Sbjct: 390 HTNAVTALHFMADNHSLLSASLDGTVRAWD 419
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
+GH V V Y PD + T + D+ ++VWNV
Sbjct: 386 QGHYFDVNCVTYSPDSQLLATGADDNKVKVWNV 418
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 516 HTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
HT VT + + D ++++AS D T+R W+
Sbjct: 430 HTNAVTALHFMADNHSLLSASLDGTVRAWD 459
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 32.7 bits (71), Expect = 0.20
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
K H K+ + +HP E + T S D T++ W++ T
Sbjct: 275 KSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLET 309
Score = 31.9 bits (69), Expect = 0.35
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 498 CGHS-KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
C H+ KGHT+ V + + PD +++ D+ ++VW++
Sbjct: 228 CIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDL 265
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GH K VT + D + TAS D T+R+W+
Sbjct: 142 GHQKVVTGIALPSGSDKLYTASKDETVRIWD 172
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH K V +++ PD+ V+T + IR W+V
Sbjct: 317 GHHKPVIAILWSPDDRQVLTCGAEEVIRRWDV 348
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 495 SCGHSKGHTKKVTRVIYHP-DEDTVITASPDHTIRVWNV 608
SC H VT V ++P DED I+ S D IR+WN+
Sbjct: 551 SCLKLFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNI 589
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 32.3 bits (70), Expect = 0.26
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH + VT +++ D+ +++ S D +IRVW++
Sbjct: 118 GHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSL 149
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 32.3 bits (70), Expect = 0.26
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
KGHT+ ++ + + PD V++ D+ ++VW++
Sbjct: 88 KGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDL 120
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
K H + + +HP E + T S D T++ W++ T
Sbjct: 130 KCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLET 164
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GH + V +HP + + + S D +RVW+
Sbjct: 47 GHRSNCSAVEFHPFGEFLASGSSDTNLRVWD 77
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDE-DTVITASPDHTIRVWN 605
KGHT V ++ + P D V TAS D ++R+W+
Sbjct: 63 KGHTDSVDQLCWDPKHSDLVATASGDKSVRLWD 95
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
+GH KKV V ++ + + + S D T R+WN+
Sbjct: 17 QGHKKKVHSVAWNSNGTKLASGSVDQTARIWNI 49
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GHT +V + P+ TV +A+ D +R+WNV
Sbjct: 384 GHTSRVLFMAQSPNGCTVASAAGDENLRLWNV 415
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GHT +V + P+ TV +A+ D +R+WNV
Sbjct: 386 GHTSRVLFMAQSPNGCTVASAAGDENLRLWNV 417
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 498 CGHS-KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
C H+ KGHT+ V + + PD V++ D+ ++VW++
Sbjct: 135 CIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDL 172
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
K H ++ + +HP E + T S D T++ W++ T
Sbjct: 182 KSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLET 216
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 498 CGHS-KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
C H+ KGHT+ V + + PD V++ D+ ++VW++
Sbjct: 135 CIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDL 172
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
K H ++ + +HP E + T S D T++ W++ T
Sbjct: 182 KSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLET 216
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 31.9 bits (69), Expect = 0.35
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
+GH V V +HP + + T S D +R+W+
Sbjct: 14 RGHRHSVMDVSFHPSKSLLFTGSADGELRIWD 45
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GH V V + P + T S D TI++W+V T
Sbjct: 173 QGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVAT 207
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH V + HP D ++T D RVW++ T
Sbjct: 258 GHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRT 291
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH V V P + V+T S D TI+ W++
Sbjct: 300 GHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDL 331
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GH V V + P + T S D TI++W+V T
Sbjct: 167 QGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVAT 201
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH V + HP D V+T D RVW++ T
Sbjct: 252 GHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRT 285
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 516 HTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
H V V+ P + VIT S D TI+ W++
Sbjct: 294 HDSDVFSVLARPTDPQVITGSHDSTIKFWDL 324
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.5 bits (68), Expect = 0.46
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVP 611
+GHT +V + P + + S D T R+W++P
Sbjct: 262 EGHTSEVCACAWSPSASLLASGSGDATARIWSIP 295
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
GH +V V + P + + S D T ++WN+ S
Sbjct: 446 GHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQS 480
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GH + V V + PD + +AS D ++R+WN
Sbjct: 358 GHQQLVNHVYFSPDGKWIASASFDKSVRLWN 388
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH + V V + PD + + S D T+R+W++ T
Sbjct: 107 GHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYT 140
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GH V +V + D +++ S D T+++W + T
Sbjct: 399 RGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRT 433
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
GH +V V + PD + V++ D +++W
Sbjct: 442 GHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVP 611
GH + V ++ D + ++TAS D T R+W++P
Sbjct: 251 GHQRWVWDCVFSVDGEFLVTASSDMTARLWSMP 283
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
+ H + + + P + TAS D T+++WNV
Sbjct: 208 QAHNGHILKCLLSPANKYLATASSDKTVKIWNV 240
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVP 611
GH + VT VI+ PD +I+ + D I VW +P
Sbjct: 610 GHGEAVTGVIFLPDCKHIISVASDGCIFVWKLP 642
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 513 GHTKKVTRVIYHP-DEDTVITASPDHTIRVWNVPT 614
GH V + P VITAS D ++R+WNV T
Sbjct: 126 GHGDSVNEIRTQPLKPQLVITASKDESVRLWNVET 160
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 31.1 bits (67), Expect = 0.61
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 522 KKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
KK+ R ++ P T+++ D IR+W+ T
Sbjct: 176 KKINRAVWGPLNQTIVSGGEDAAIRIWDAET 206
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
KGH + +T + Y+ + D + + + DHT VW
Sbjct: 34 KGHERPLTFLRYNRNGDLLFSCAKDHTPTVW 64
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH + +T + D+ +T S D T ++W++ T
Sbjct: 218 GHKEAITSLCKAADDSHFLTGSHDKTAKLWDMRT 251
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 31.1 bits (67), Expect = 0.61
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 504 HSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
H K++ R ++ P T+++ D IR+W+ T
Sbjct: 143 HCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAET 179
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
KGH + +T + Y+ + D + + + DHT +W
Sbjct: 7 KGHERPLTFLRYNREGDLLFSCAKDHTPTLW 37
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH K +T + D+ +T S D T ++W++ T
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRT 224
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 31.1 bits (67), Expect = 0.61
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 504 HSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
H K++ R ++ P T+++ D IR+W+ T
Sbjct: 143 HCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAET 179
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
KGH + +T + Y+ + D + + + DHT +W
Sbjct: 7 KGHERPLTFLRYNREGDLLFSCAKDHTPTLW 37
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH K +T + D+ +T S D T ++W++ T
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRT 224
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 31.1 bits (67), Expect = 0.61
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 504 HSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
H K++ R ++ P T+++ D IR+W+ T
Sbjct: 143 HCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAET 179
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
KGH + +T + Y+ + D + + + DHT +W
Sbjct: 7 KGHERPLTFLRYNREGDLLFSCAKDHTPTLW 37
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH K +T + D+ +T S D T ++W++ T
Sbjct: 191 GHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRT 224
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 510 KGHTKKVTRVIYHP-DEDTVITASPDHTIRVW 602
KGH + VT V++ D++ + TAS D T ++W
Sbjct: 103 KGHKEHVTDVVFSSVDDECLATASTDRTEKIW 134
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 30.7 bits (66), Expect = 0.81
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH K V+ + D +T++TAS D+T+++W++
Sbjct: 880 GHNKAVSYAKFL-DNETLVTASTDNTLKLWDL 910
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
GH+K V+ V + D T++++S D+T+++W++ S
Sbjct: 702 GHSKTVSYVKF-VDSSTLVSSSTDNTLKLWDLSMS 735
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH + V + PD V+T S D + +VW V
Sbjct: 94 GHKGSIYAVSWSPDSKRVLTVSADKSAKVWEV 125
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
KGH++ ++ + + PD V++ D+ ++VW++
Sbjct: 139 KGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDL 171
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
K H + + +HP E + T S D T++ W++ T
Sbjct: 181 KFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLET 215
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GH+ V + P D V+++S D TIR+W+
Sbjct: 416 GHSGPVYSATFSPPGDFVLSSSADTTIRLWS 446
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 537 VIYHPDEDTVITASPDHTIRVWNVPT 614
V +HP+ + + T S D T+R+W+V T
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLWDVQT 530
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
+GHTK V+ V + D TV+TA D +++W+V
Sbjct: 110 QGHTKTVSYVRFL-DGGTVVTAGTDGCLKLWSV 141
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 510 KGHTKKVTRVIYHP-DEDTVITASPDHTIRVWNV 608
+GHTK VT + +HP E+ ++ S D +I W V
Sbjct: 349 RGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWIV 382
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH VT + PD + ++T S D T+ +W +
Sbjct: 2666 GHCAPVTCLALSPDNNFLVTGSRDSTVLLWRI 2697
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 501 GHSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
G +KGH V V Y P ++ + S D T+R+W V
Sbjct: 259 GCNKGHHGPVHCVRYAPGGESYTSGSEDGTVRIWVV 294
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
GH K V+ + D + T S D T+RVW+
Sbjct: 149 GHEKLVSGIALPSGSDKLYTGSKDETLRVWD 179
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 516 HTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
HT +T + + P + + T+S D T+RVW+
Sbjct: 692 HTAMITDIRFSPSQLRLATSSFDKTVRVWD 721
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 513 GHTKKVTRVIYHP-DEDTVITASPDHTIRVWNV 608
GH+ VT + +HP +D + + D+ IR W++
Sbjct: 734 GHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSI 766
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
KGHT VT + + + + S D ++R+W V T
Sbjct: 420 KGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVET 454
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITA-SPDHTIRVWNVPT 614
GH + V +HP ++ + S DH +R+WN T
Sbjct: 143 GHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKT 177
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITA-SPDHTIRVWNVPT 614
GH + V +HP ++ + S DH +R+WN T
Sbjct: 143 GHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKT 177
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
KGH +V + P D+ ++ S D ++R+W++
Sbjct: 111 KGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDL 143
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.1 bits (62), Expect = 2.5
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH + R+++ D +++ S D + R+W +
Sbjct: 233 GHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI 264
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.1 bits (62), Expect = 2.5
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH + R+++ D +++ S D + R+W +
Sbjct: 233 GHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI 264
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH + V + PD V+T S D + ++W++
Sbjct: 230 GHKGSIYAVSWSPDGKQVLTVSADKSAKIWDI 261
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
+ H + + + P + TAS D T+++WN+
Sbjct: 214 QAHNSHILKCLLSPGNKYLATASSDKTVKIWNL 246
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH+K VT + + + ++S D TIRVW +
Sbjct: 214 GHSKDVTDFDFSSNNQYIASSSLDKTIRVWEL 245
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
GH K V+ V + D T++++S D+T+++W++ S
Sbjct: 660 GHHKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMS 693
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
GH K V+ V + D T++++S D+T+++W++ S
Sbjct: 660 GHHKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMS 693
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 397 GILSLDINPSDHSKLLTGGNDRNATVFNKDTEQVVA 504
G+++++ PSD LLT G D +N T ++VA
Sbjct: 254 GVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKIVA 289
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 460 RNATVFNKDTEQVVAIPKVTPRKSP 534
RN VFNK+ +VA+P V P +P
Sbjct: 2823 RNIPVFNKNQRSIVALPIVVPIGAP 2847
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVP 611
GH V + D + +++ D T+R+WNVP
Sbjct: 97 GHQGAVRGLTASTDGNVLVSCGTDCTVRLWNVP 129
>At4g22790.1 68417.m03289 MATE efflux family protein contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 491
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 347 HSSLLHRILVFILPVFLVSYLWTSIHQIIVNS*LEETI--VTQQSLIRILNKL 499
H +L +L+ +L +S+LW ++H+I+ E I + ++ L+ +L +L
Sbjct: 109 HKTLFMAVLLLLLISVPISFLWLNVHKILTGFGQREDISFIAKKYLLYLLPEL 161
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 397 GILSLDINPSDHSKLLTGGNDRNATVFNKDTEQVVA 504
G+++++ PSD S LLT D ++ +T ++VA
Sbjct: 265 GVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVA 300
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 397 GILSLDINPSDHSKLLTGGNDRNATVFNKDTEQVVA 504
G+++++ PSD S LLT D ++ +T ++VA
Sbjct: 265 GVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVA 300
>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein /
NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
to hin1 GB:CAA68848 [Nicotiana tabacum]
Length = 240
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 63 LNSCLAVCNCCLCVKACNI 7
L SCL C CC+ CNI
Sbjct: 40 LGSCLRCCGCCILSLICNI 58
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
KGH+ + V+ ++T S D T R+W+ T
Sbjct: 198 KGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKT 232
>At5g62020.1 68418.m07785 heat shock factor protein, putative (HSF6)
/ heat shock transcription factor, putative (HTSF6)
identical to heat shock transcription factor 6 (HSF6)
SP: Q9SCW4 from [Arabidopsis thaliana] ;contains Pfam
profile: PF00447 HSF-type DNA-binding domain
Length = 299
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 103 SPTHKGSDSGARGPRHTEATSRYCSTPSTTPHGGVSRQ-CGSNRHVCGRGVSLQERATAL 279
SP++ G D+ + +S YC TT +GG+S + N + + + L T +
Sbjct: 137 SPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLEENEKLRSQNIQLNRELTQM 196
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
+GHT +V + + D + +++AS D T+R+W V
Sbjct: 325 RGHTGEVLDISWSKD-NYLLSASMDKTVRLWKV 356
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
+GH +VT +++ ++++S D +RVW++ T
Sbjct: 145 RGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLET 179
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 501 GHSKGHTKKVTRVIYHPDEDTVITASPDHTIRVW 602
G +KGH V V + P ++ + S D TIR+W
Sbjct: 264 GCNKGHHGPVHCVRFAPTGESYASGSEDGTIRIW 297
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVP 611
+GH +T + + V +AS D IRVW +P
Sbjct: 344 RGHEGDITDLAVSSNNALVASASNDFVIRVWRLP 377
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 510 KGHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
+GH V I+ VIT S D +++W++ T+
Sbjct: 302 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA 337
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 103 SPTHKGSDSGARGPRHTEATSRYCSTPS 186
S +HK SD G P H+ +TSR PS
Sbjct: 1151 SASHKTSDRGNSEPGHSSSTSRQGMNPS 1178
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 504 HSKGHTKKVTRVIYHP-DEDTVITASPDHTIRVWN 605
+SK HT V + +P D ++ T S D T+RVW+
Sbjct: 205 NSKVHTMGVCCISSNPSDPYSIFTGSYDETLRVWD 239
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 501 GHSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
G KGH +HP+ T T + D T R+W+
Sbjct: 313 GTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWD 347
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 501 GHSKGHTKKVTRVIYHPDEDTVITASPDHTIRVWN 605
G KGH +HP+ T T + D T R+W+
Sbjct: 307 GTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWD 341
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH +HPD T T + D T RVW++
Sbjct: 317 GHLDFSFASAWHPDGVTFSTGNQDKTCRVWDI 348
>At2g17390.1 68415.m02008 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 344
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 137 EALATLKPQAGIAAPQAPHPTE 202
E+ +T KP++G AP +P PT+
Sbjct: 22 ESKSTTKPESGSGAPPSPSPTD 43
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH VT + PD + T S D ++ VWN T
Sbjct: 195 GHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKT 228
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNV 608
GH +HPD T T + D T RVW++
Sbjct: 315 GHLDFSFASAWHPDGFTFSTGNQDKTCRVWDI 346
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 516 HTKKVTRVIYHP-DEDTVITASPDHTIRVWN 605
H VT V ++P D+D I+ S D +R+W+
Sbjct: 395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWS 425
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 516 HTKKVTRVIYHP-DEDTVITASPDHTIRVWN 605
H VT V ++P D+D I+ S D +R+W+
Sbjct: 395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWS 425
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
GH V + DE+ + T+S D TIRVW++ S
Sbjct: 18 GHDDDVRGICVCNDEN-IATSSRDRTIRVWSLDPS 51
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPTS 617
GH V + DE+ + T+S D TIRVW++ S
Sbjct: 18 GHDDDVRGICVCNDEN-IATSSRDRTIRVWSLDPS 51
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 516 HTKKVTRVIYHPDEDTV-ITASPDHTIRVWNVP 611
H+ VT + ++P +D I+ S D +RVW++P
Sbjct: 552 HSDYVTCIQFNPVDDRYFISGSLDAKVRVWSIP 584
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 103 SPTHKGSDSGARGPRHTEATSRYCSTPSTTP 195
SP H S S A P H+ AT + +PS++P
Sbjct: 256 SPAHAPSHSPAHSPSHSPATPK-SPSPSSSP 285
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVI-TASPDHTIRVW 602
GH+ V V ++P ++ +AS D TIR+W
Sbjct: 483 GHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 513 GHTKKVTRVIYHPDEDTVITASPDHTIRVWNVPT 614
GH K V + + D +TA D I+ W+ T
Sbjct: 324 GHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTET 357
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 424 SDHSKLLTGGNDRNATVFNKDTEQVVA 504
+D SK LT G D+N ++ +T QV++
Sbjct: 336 NDGSKFLTAGYDKNIKYWDTETGQVIS 362
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,601,841
Number of Sequences: 28952
Number of extensions: 306641
Number of successful extensions: 1288
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -