Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0887.Seq
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 33 0.26
08_02_0965 + 23078568-23079430,23079527-23079755,23079854-23080018 33 0.26
12_02_1199 + 26928685-26929671 31 1.4
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019... 29 5.7
09_04_0367 - 16978069-16978085,16978514-16978611,16979069-169792... 28 7.5
07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723... 28 7.5
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 28 7.5
11_06_0550 + 24879074-24881290 28 9.9
03_01_0605 - 4453409-4453692,4454541-4454594,4454706-4454812,445... 28 9.9
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 28 9.9
02_01_0153 - 1073790-1074026,1074110-1074595,1074686-1075213,107... 28 9.9
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3
Query: 221 TGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERG 72
T G+ F D FGV +F G E H R QGL Y + T+ G
Sbjct: 268 TYAGEYFADRMHGFGVYSFANGHRYEGAWHEGRRQGLGMYTFRNGETQAG 317
>08_02_0965 + 23078568-23079430,23079527-23079755,23079854-23080018
Length = 418
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = -3
Query: 212 GQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEW 48
G+ F D FGV +F G E + H ++QGL Y T R G R EW
Sbjct: 295 GEYFADRIHGFGVYSFANGHCYEGSWHEGKKQGLGMY------TFRNGDRRSGEW 343
>12_02_1199 + 26928685-26929671
Length = 328
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 577 LLSITSRWNVAAVTILTMSLRFWRWKVR 660
L+ I SRW VAAVT+ ++SL FW VR
Sbjct: 116 LMVIWSRWLVAAVTVASLSL-FWIESVR 142
>10_08_0507 +
18401266-18401341,18401448-18401633,18401918-18401953,
18402244-18402650,18402998-18403099,18403206-18403433
Length = 344
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 275 AVMVWRYGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIH-SAREQGLHFYA 99
A WR E V R + GG + DS V + T +VS + I +R +G+ FYA
Sbjct: 55 ATASWRRRRETVVRSDFAAGGAATMGDSPQALSVSSTPTWKVSMEYIDVVSRVRGVCFYA 114
>09_04_0367 -
16978069-16978085,16978514-16978611,16979069-16979229,
16979320-16979548,16979731-16980593
Length = 455
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 212 GQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEW 48
G+ F D FGV +F G E + H ++QG Y T R G + +W
Sbjct: 295 GEYFGDKIHGFGVYSFANGHCYEGSWHEGKKQGFGMY------TFRNGDKRSGDW 343
>07_01_0871 -
7230228-7230338,7231055-7231348,7231972-7232148,
7232513-7232551,7232734-7234057,7238145-7238189,
7238456-7238498,7238680-7238716,7239035-7239325,
7239634-7239685,7239690-7239773,7240064-7240137,
7240703-7241641
Length = 1169
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 336 YLEHGGCRSITLAAVCNRHRSAISFI 413
YL G R + ++C+RH A +F+
Sbjct: 473 YLHRDGAREYMICSICSRHPDAFAFV 498
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 613 VTILTMSLRFWRWKVRG*FLMMQSYIANCCA-GTARCK 723
VT+++ SL W+W ++Q I +CC+ T CK
Sbjct: 197 VTVISFSLAIWQWMKA---TVLQEKIRSCCSVSTVDCK 231
>11_06_0550 + 24879074-24881290
Length = 738
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -1
Query: 508 PQEKPPFLPHPFLRCH*MNASSNALPAKKHNLMKDIALLWRLHTAASVID 359
P +PH + M SN + +KDI LW+L VID
Sbjct: 246 PSSSSVQIPHKIKKMSSMEVLSNVKASWTSRELKDIGKLWQLRKLGVVID 295
>03_01_0605 -
4453409-4453692,4454541-4454594,4454706-4454812,
4454865-4454928,4456996-4457896
Length = 469
Score = 27.9 bits (59), Expect = 9.9
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Frame = +3
Query: 75 TFSGMVTCSIKMQSLLAG*MNGLFRNFASNKSIHAKTRGAIDKTLPAARAPGDA--LDHL 248
+ SG++ C+++ SL+ G + S S H + R A+ AA A DA L +
Sbjct: 73 SLSGLLPCALRAFSLIPHPSTGSYTAILSALSRHGRPREALSLFSAAAVARPDAELLSCV 132
Query: 249 RSVSPHHNGLRPRRASIQEASSSPGTAIKYLEHGGCRSITLAAVCNRHRSA 401
S + P RA+ + + G + L A+C R +A
Sbjct: 133 VSCCRRASASLPARAA-HAYGVKTAPLLAFYASAGPALVALYAMCGRVSAA 182
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 255 VSPHHNGLRPRRASIQEASSSPGTAIKYLEHGGCRSITLA 374
+S N L PR+ + P TA + GGCRSI+ A
Sbjct: 45 ISARRNPL-PRQFPCSRCPTGPSTACQTPPSGGCRSISTA 83
>02_01_0153 -
1073790-1074026,1074110-1074595,1074686-1075213,
1075421-1075513,1075620-1075671,1075800-1075904,
1076020-1076180
Length = 553
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -3
Query: 218 GGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERG 72
GGG + D AA G + VSE ++ A+EQ H AAG E G
Sbjct: 209 GGGDAVGDEAAAAGAWPYAGMAVSEPSVAVAQEQMQH--AAGGGVAESG 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,418,572
Number of Sequences: 37544
Number of extensions: 566371
Number of successful extensions: 1771
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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