Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0887.Seq
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44115| Best HMM Match : NIF3 (HMM E-Value=8.7e-06)                  40   0.002
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)                  33   0.36 
SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)                   31   1.4  
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)             29   4.4  
SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3)                    29   5.8  
SB_50113| Best HMM Match : NHL (HMM E-Value=2.3e-07)                   29   5.8  

>SB_44115| Best HMM Match : NIF3 (HMM E-Value=8.7e-06)
          Length = 154

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -3

Query: 245 VVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERG 72
           ++  VA C G G S +   A    D ++TGE+S   +  A  +G+H     H  TERG
Sbjct: 90  LLSTVALCAGSGASVLQGVA---ADVYLTGEMSHHEVLEAVSRGVHVILCEHSNTERG 144


>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
          Length = 288

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -3

Query: 242 VQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIR 63
           +++VA   G G   I +A + G DAF+T ++     + A E  L     GH  +ER    
Sbjct: 202 IKKVAVLGGSGSYAIKNALQAGADAFLTADLKYHQFYEA-ENRLLLADIGHFESERYTKN 260

Query: 62  ALSEWLNE 39
            + ++L E
Sbjct: 261 YIVDYLKE 268


>SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)
          Length = 221

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 139 VCSETSPVIKASTPKRAALSIKLCPPPVHQATRWTTSGPYRHTITAYVPDALQSRKP 309
           V +   PV +  T     LS+    PP       TTS PYRH+  +YVP+ +    P
Sbjct: 164 VTTVRKPVTRPKTTS-GTLSVSKSIPPRPSTEPITTSSPYRHS-WSYVPNFVDYHSP 218


>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 139 VCSETSPVIKASTPKRAALSIKLCPPPVHQATRWTTSGPYRHTITAYVPDALQSRKP 309
           V +   PV +  T     LS+    PP       TTS PYRH+  +YVP+ +    P
Sbjct: 423 VTTVRKPVTRPKTTS-GTLSVSKSIPPRPSTEPITTSSPYRHS-WSYVPNFVDYHSP 477


>SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 677 CKVTSQTVALVQLGANRYGGTHSCRSTVATEEPESEDARY 796
           C+ T  T    ++G    GGT  CR T++   P+  +ARY
Sbjct: 130 CRYTLSTGLPDRVGTRYQGGTGPCRYTLSRGLPDRVNARY 169


>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 642 KTQ*HSQDGNGSNVPARSNTQQSGSAT 562
           K + H+Q+ +GS  PA  N++QSGS T
Sbjct: 255 KEESHAQNSSGSQWPALLNSKQSGSNT 281


>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
          Length = 1480

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 122  EQGLHFYAAGHHATERGG---IRALSEWLNEN 36
            E G+H YA GH  T  GG    +A+SE +N N
Sbjct: 1148 EDGIHTYAHGHFRTLSGGNSMTQAVSEKINPN 1179


>SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3)
          Length = 272

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 157 PVIKASTPKRAALSIKLCPPPVHQATRWTTSGPYRHTIT 273
           P I++S PK    S  L P P    T W T G Y+ +IT
Sbjct: 221 PPIESSPPKTGIYSRHLQPTPPQANTHWGTLG-YKTSIT 258


>SB_50113| Best HMM Match : NHL (HMM E-Value=2.3e-07)
          Length = 495

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 157 PVIKASTPKRAALSIKLCPPPVHQATRWTTSGPYRHTIT 273
           P I++S PK    S  L P P    T W T G Y+ +IT
Sbjct: 444 PPIESSPPKTGIYSRHLQPTPPQANTHWGTLG-YKTSIT 481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,122,768
Number of Sequences: 59808
Number of extensions: 580726
Number of successful extensions: 1662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)