Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0887.Seq
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membr...    30   1.7  
Z81109-15|CAJ85778.1|  226|Caenorhabditis elegans Hypothetical p...    29   5.1  
Z81109-14|CAJ85777.1|  224|Caenorhabditis elegans Hypothetical p...    29   5.1  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    29   5.1  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC006625-10|AAK68271.1|  325|Caenorhabditis elegans Hypothetical...    28   8.9  

>U53338-7|AAA96195.2|  342|Caenorhabditis elegans Lunapark (membrane
           protein) homologprotein 1 protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +3

Query: 210 PAARAPGDALDHLRSVSPHHNGLR---PRRASIQEASSSPGTAIKYLEHG-GCRSITLAA 377
           P A+ P  A++ + +++P+H   R   P R  +++ ++       ++  G  CR+  + +
Sbjct: 179 PTAQGPNSAMNSM-NMTPYHQRNRNAVPIRPFLRQTTAFDRVLDYFMSDGPNCRNALICS 237

Query: 378 VCNRHRSAISFIKLCFFAGRAFE 446
           +C+ H    +  +  + + R FE
Sbjct: 238 ICHTHNGMSTPAEYPYISFRCFE 260


>Z81109-15|CAJ85778.1|  226|Caenorhabditis elegans Hypothetical
           protein R10D12.14b protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 511 MPQEKPPFLPHPFLRCH*MNASSNALPAKKHN 416
           MP   PPFLP P L  H MN +   + A+ H+
Sbjct: 109 MPMRFPPFLPMPLL--HQMNQNGPPMGAQMHS 138


>Z81109-14|CAJ85777.1|  224|Caenorhabditis elegans Hypothetical
           protein R10D12.14a protein.
          Length = 224

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 511 MPQEKPPFLPHPFLRCH*MNASSNALPAKKHN 416
           MP   PPFLP P L  H MN +   + A+ H+
Sbjct: 109 MPMRFPPFLPMPLL--HQMNQNGPPMGAQMHS 138


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 165  KSIHAKTRGAIDKTLPAARAPGDALDHLRSVS--PHHNGLRPRRASIQEASSSPGT 326
            K  HAK R A+ +   AAR     + H+++ S   H N  +PR   +QE  ++  T
Sbjct: 1006 KEAHAKPREALVRLENAARTIESTIRHVKAQSNFKHRNVKQPRIERVQEYCAAIST 1061


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 571 FCNAMGYSRRLRKSKQSPA*MPQEKPPFLPHPFL 470
           F N M + + + K K  P  MP+ KP   P P L
Sbjct: 167 FPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPML 200


>AC006625-10|AAK68271.1|  325|Caenorhabditis elegans Hypothetical
           protein C55B7.11 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +3

Query: 150 NFASNKSIHAKTRGAIDKTLPAARAPGDALDHLRSVSPHHNGLRPRRASIQEASSSPGTA 329
           N +   +IHA    ++   LP  R  G  L H+       +G+ P    I E+  S    
Sbjct: 2   NISVLDAIHALNELSMQDYLPRPRGGGVLLSHITQYYQSKDGIEPLAKKIIESLRSHTMK 61

Query: 330 IKYLEHGGCRSI 365
              + H  C+S+
Sbjct: 62  DDDMAHISCQSM 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,491,715
Number of Sequences: 27780
Number of extensions: 429574
Number of successful extensions: 1325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)