Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0887.Seq
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    27   0.20 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.62 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   5.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 723 FAPSCTSATVCDVTLHHQELTTDLP 649
           FAP+  +  V  V +HH+ LT  LP
Sbjct: 280 FAPAALTTEVKSVEMHHEALTEALP 304


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = -2

Query: 618 GNGSNVPARSNTQQSGSATQWDIPEG*GNRNNHQPECLKKSLPFFL 481
           GN  N    +       A   D P    + N H+ E    S P FL
Sbjct: 250 GNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEAESEHTSTPNFL 295


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 681 LHHQELTTDLPSPKTQ*HSQDGNGSNVP 598
           +HH  +   + SP+    S+   GS++P
Sbjct: 341 MHHLHVAKQMASPEPPKSSESSTGSSIP 368


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 723 FAPSCTSATVCDVTLHHQELTTDLP 649
           FAP+  +  V  V +HH+ L   +P
Sbjct: 223 FAPAGLTTEVKSVEMHHEALQEAVP 247


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 723 FAPSCTSATVCDVTLHHQELTTDLP 649
           FAP+  +  V  V +HH+ L   +P
Sbjct: 280 FAPAGLTTEVKSVEMHHEALQEAVP 304


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 748 SLNSGNGRTRKRRCPVP 798
           S++  NG+T  + CP P
Sbjct: 369 SVHYSNGQTHSQLCPTP 385


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 696 VCDVTLHHQELTTDLPSPKTQ*HSQ 622
           VCD+ L   E  TDL    T  H Q
Sbjct: 492 VCDMALDMVEAITDLKDRSTGLHLQ 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,472
Number of Sequences: 438
Number of extensions: 5144
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)