Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0887.Seq
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    31   0.67 
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    29   3.6  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   4.7  
At4g10890.1 68417.m01772 expressed protein                             29   4.7  
At3g54950.1 68416.m06092 patatin-related low similarity to patat...    28   8.3  
At3g23800.1 68416.m02991 selenium-binding family protein contain...    28   8.3  

>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 212 GQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERG 72
           G+ F D    FGV  F  G   E   H  R QGL  Y   +  T+ G
Sbjct: 348 GEYFADKMHGFGVYHFANGHKYEGAWHEGRRQGLGMYTFRNGDTQAG 394


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +1

Query: 115 PCSRAE*MVCSETSPVIKASTPKRA-ALSIKLCP-PPVHQATRWTTSGPYRHTITAYVPD 288
           P + ++ +  S+  P  +++ P +  A S  L P PPV  +T+   S P   T +A VP+
Sbjct: 541 PPTTSKPLPVSQPPPTFQSTCPSQPPAASSSLSPLPPVFNSTQSFQSPPVSTTPSA-VPE 599

Query: 289 ALQ-SRKPAPVPAQQ 330
           A      PAP P  Q
Sbjct: 600 ASTIPSPPAPAPVAQ 614


>At5g15920.1 68418.m01862 structural maintenance of chromosomes
           (SMC) family protein (MSS2) similar to SMC-related
           protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 289 RLGRKPLWCGDTDLRWSSASPGARAAGKVLSI 194
           +LG K  W  D   RWSS+  G  ++  V S+
Sbjct: 574 KLGIKDFWTPDNHYRWSSSRYGGHSSASVDSV 605


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 768 SVATVERQE*VPPYLFAPSCTSATVCDVTLHHQELTTDLPSPK 640
           S+ +V+++    P + +P CT  +V D  L + +L+ D+P PK
Sbjct: 401 SLGSVDKESNNHPLINSP-CTGRSVVDSRLENCKLSKDVPPPK 442


>At3g54950.1 68416.m06092 patatin-related low similarity to patatin
           [GI:169500][Solanum tuberosum]; contains Patatin domain
           PF01734
          Length = 488

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 691 ANCCAGTARCKQVWRNSFLSL 753
           + CC+GTA+ K+V + SF  L
Sbjct: 197 SGCCSGTAKLKKVMKESFSEL 217


>At3g23800.1 68416.m02991 selenium-binding family protein contains
           Pfam profile: PF05694 56kDa selenium binding protein
           (SBP56)
          Length = 480

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 606 CCRYHPDYVTAFLAMEGP 659
           CC+  P Y T  LAM GP
Sbjct: 12  CCKSGPGYATPLLAMSGP 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,545,575
Number of Sequences: 28952
Number of extensions: 404851
Number of successful extensions: 1231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)