Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0886.Seq
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         24   1.2  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   6.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.7  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 307 NCRILKRSILNSKTSGTKGSSNRKPETGRTD 399
           N + L R    S+    +  S R+P+TGR D
Sbjct: 195 NSKSLPRQYSQSRGRHNQSRSKRQPKTGRED 225


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 416 LEVNSASVLPVSGFLFEDPLVPDVFEFRIERF 321
           L+   + ++P+SG  ++    PD  ++  ERF
Sbjct: 383 LDKGVSIMVPISGLHYDPEYYPDPEKYDPERF 414


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +3

Query: 57  QETNKDPTQLQDLGDCREED 116
           ++ +KD  +++D+G+  +ED
Sbjct: 238 EDKDKDKPKIEDVGEDEDED 257


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 393 DGCAIYFKKSL 425
           DGCA +FK+S+
Sbjct: 56  DGCAGFFKRSI 66


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 393 DGCAIYFKKSL 425
           DGCA +FK+S+
Sbjct: 56  DGCAGFFKRSI 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,470
Number of Sequences: 336
Number of extensions: 4072
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)