Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0886.Seq
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    50   4e-07
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    41   2e-04
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    33   0.047
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    31   0.14 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    29   0.58 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   2.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   7.2  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   9.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.5  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 10/100 (10%)
 Frame = +3

Query: 258 QEIRRLSPDILCLQEVQLSHLETFYSKFENI-GYQGVFKQKTGDRQ---------DGCAI 407
           QE+   + DI+CLQEV + + +TF++   ++ GY+GV   K+  R          DGCA 
Sbjct: 373 QELGGYNADIICLQEVDVENYDTFFAPQMSLKGYKGVHFPKSRVRTMNEVERRIVDGCAT 432

Query: 408 YFKKSLFDLDDQISVEFFQPELPILNRDNIGVIVNCRRRI 527
           +FK S + + +++ +E+ Q   P L R +I +  N   R+
Sbjct: 433 FFKTSKYVMHEKMVIEYNQ--APSLRRQDIKLTSNMYNRV 470



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
 Frame = +1

Query: 532 GSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAY-FNNGR----------------E 660
           GS ++VA  H+ ++P+  DV++ Q+ +L+ EI + A  F N                  E
Sbjct: 488 GSRLIVANCHIHWDPQFRDVKVIQVAMLMDEIAQVATKFRNMPSKIPSDQLKDERPTYPE 547

Query: 661 SGHFPVILTGDFNSTPESAVINLLDRGRV 747
               P+++ GDFNS   S V + L  G +
Sbjct: 548 YLKIPILICGDFNSVQGSGVYDFLSSGSI 576


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
 Frame = +3

Query: 261 EIRRLSPDILCLQEVQLSHLETFYSK-FENIGYQGVFKQKTGDRQDGCAIYFKKSLFDLD 437
           E+   SP + C+QEV    +  FY K    +GY+  F +  G +  G  I++K SLF   
Sbjct: 158 ELTYYSPTLGCMQEVDAEFVPNFYKKLLGGLGYELHFIKGEG-KTHGIMIFWKSSLFKKV 216

Query: 438 DQISVEF-FQPELP-ILNRDNIGVIVNCRR 521
             +++ +    ELP  +N  NIG  V   R
Sbjct: 217 QDLTIYYDDHDELPGRMNTKNIGCCVRLER 246



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +1

Query: 529 PGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTP 708
           P   + +ATTHL ++P  +  RL Q  IL+ E+++ A     +    +PV + GDFN+ P
Sbjct: 250 PSRGLFLATTHLFWHPYGSYERLRQGAILVKEVNKMA-----QSHPSWPVFIAGDFNTEP 304


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +3

Query: 243 IQTSYQEIRRLSPDILCLQEVQLSHLETFYS-KFENIGYQGVFKQKTGDRQD--GCAIYF 413
           ++    ++ RL  ++ CL++ QLS  +T +S   E  G Q   K   G+  D  G + + 
Sbjct: 461 LEVESSKVLRLDEEMKCLKDEQLSQFDTVFSLTDERDGLQKDLKNTKGNLDDEIGRSAFL 520

Query: 414 KKSLFDLDDQISVEFFQPELPILNRDN 494
           K  +   D ++++E     L  L++ N
Sbjct: 521 KSQI--RDQELTIEKLHDSLETLSQTN 545


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 411 FKKSLFDLDDQISVEFFQPELPILNRDNIGVIVNCRRRIARVFH 542
           F  +L D+DD +S+ F    +P+ ++     + NC R  A   H
Sbjct: 126 FHDALKDIDDALSMLFLFSTMPVTDKIGAATVANCERLCAEFQH 169


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +3

Query: 360  GVFKQKTGDRQDGCAIYFKKSLFDLDDQISVEFFQPELPILNRDNIGVIVNCRRRIA 530
            GVF +     +D C  Y+K+ +F  DD++S E+ +    +L+ DN  + ++   RIA
Sbjct: 2227 GVFTKLLRKTRDSC--YYKRYMFVFDDELSPEWVEAMNSLLD-DNKTLTLSNGERIA 2280


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 407 NSASVLPVSGFLFEDPLVPDVFEF 336
           N  S+ P++ FLF++ L PD+  F
Sbjct: 501 NVTSIAPINAFLFQEYLFPDLQHF 524


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 280  GDSLRISW*DVWICVSTL 227
            GD LR SW DV +C+S L
Sbjct: 1057 GDKLRDSWKDVLLCISQL 1074


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 523 LRRQFTITPILSRLRIGSSGWK-NSTLI*SSKSNKDFLK 410
           L R +  TP + R R+G  GW     L      N DF+K
Sbjct: 698 LLRSYVDTPYIDRHRVGIWGWSFGGYLTLKILENADFIK 736


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 7   SIVEQKCDSEGAKSEHHRRPTKIPLNFRTWETVGKKTDSDETTFR--FKVVSYNVLAQ 174
           +I+   C  +  KSEH R   ++       +T+  K D    T R   K++ Y++L++
Sbjct: 394 TIIYNMCKFKITKSEHERELNQLRNMAEASKTIDYKEDETAPTERRIQKILEYDILSK 451


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 640 YFNNGRESGHFPVILTGDFNSTPESAVINLLD 735
           Y+N GR+    P  +T  FN T + +  +L D
Sbjct: 360 YYNRGRQPDQRPPNVTAAFNYTSDESQYSLRD 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,276
Number of Sequences: 5004
Number of extensions: 68566
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)