Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0886.Seq
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 64 2e-10
05_04_0171 - 18701946-18702242,18702621-18702768,18703665-187037... 56 4e-08
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428... 54 1e-07
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 54 1e-07
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 54 2e-07
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 31 0.81
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157... 29 5.7
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 29 5.7
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 63.7 bits (148), Expect = 2e-10
Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 3/239 (1%)
Frame = +1
Query: 31 SEGAKSEHHRRPTKIPLNFRTWETVGKKTDSDETTFRFKVVSYNVLAQYLLEYHPYLYID 210
S G + HR + + R W + + SD ++SYN+LA YHP LY+D
Sbjct: 58 SPGRVYQRHRAQ-QYGVPSRRWVLAEEASTSDGDACT--IMSYNILADNNAHYHPDLYLD 114
Query: 211 CSPRNLKWKHRSRRLTKKFA--DCHLTYCASKKFNCRILKRSILN-SKTSGTKGSSNRKP 381
++W R R + ++ D L C + R + + N S KG +
Sbjct: 115 VPWDAMRWDSRRRLIIREIRHWDPDLV-CLQEVDRFRDIATEMENRGYQSRFKGRTGDAK 173
Query: 382 ETGRTDALFTSRSLYLIWTIKXXXXXXXXXXXXXXXXXXXXXXXXAEELPGSSIVVATTH 561
+ T + S+ L+L+ + A++L VV H
Sbjct: 174 DGCAT--FWKSKGLHLLE--EDSIDFSEYNLRNNVAQIFVFELNRAQKL-----VVGNIH 224
Query: 562 LLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAVINLLDR 738
+L+NPKR DV+L QI++LL + + A + G P++L GDFNSTP+ I+L DR
Sbjct: 225 VLFNPKRGDVKLGQIRMLLEKANALA-----EKWGGIPIVLAGDFNSTPD-LDISLHDR 277
Score = 59.7 bits (138), Expect = 3e-09
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +3
Query: 258 QEIRRLSPDILCLQEVQLSHLETFYSKFENIGYQGVFKQKTGDRQDGCAIYFKKSLFDLD 437
+EIR PD++CLQEV ++ EN GYQ FK +TGD +DGCA ++K L
Sbjct: 131 REIRHWDPDLVCLQEVD--RFRDIATEMENRGYQSRFKGRTGDAKDGCATFWKSKGLHLL 188
Query: 438 DQISVEFFQPEL 473
++ S++F + L
Sbjct: 189 EEDSIDFSEYNL 200
>05_04_0171 -
18701946-18702242,18702621-18702768,18703665-18703786,
18704360-18704429,18704922-18704971,18705107-18705156,
18705296-18705359
Length = 266
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = +3
Query: 237 TQIQTSYQEIRRLSPDILCLQEVQLSHLETFYSK-FENIGYQGVFKQKTGDRQDGCAIYF 413
T+ + E++ D++C+QE L +TFY K EN GY ++ Q++GD++DGC I++
Sbjct: 58 TRSKAVLSELKSFEADLMCIQE--LDEYDTFYKKNMENSGYSSIYIQRSGDKRDGCGIFY 115
Query: 414 K 416
K
Sbjct: 116 K 116
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 562 LLYNPKRT----DVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAVINL 729
+ Y PKR DV+LAQ K +L+ + +F + + + V++ GDFNSTP V N
Sbjct: 113 IFYKPKRDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNY 172
Query: 730 L 732
L
Sbjct: 173 L 173
Score = 34.7 bits (76), Expect = 0.087
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 67 TKIPLNFRTWETVGKKTDSDETTFRFKVVSYNVLAQYLLE--YHPYLYIDCSPRNLKWKH 240
T+ +F T ++D+ ++F++VSYN+LAQ ++ + P+ C LKWK
Sbjct: 3 TQAQPSFAPLPTAQSESDAGAAGYQFRLVSYNILAQVYVKSAFFPHSPSAC----LKWKT 58
Query: 241 RSR 249
RS+
Sbjct: 59 RSK 61
>10_07_0177 -
13841148-13841267,13841569-13841645,13842710-13842860,
13842942-13843056,13843145-13843236,13843317-13843370,
13843849-13843935,13844023-13844109,13844191-13844274,
13844359-13844445,13844793-13845549,13846491-13846648
Length = 622
Score = 54.4 bits (125), Expect = 1e-07
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Frame = +3
Query: 246 QTSYQEIRRLSPDILCLQEVQLSHLETFYS-KFENIGYQGVFKQKTGD-------RQDGC 401
Q +EI DI+CLQEVQL+H E F+S + + GYQ ++K++T + DGC
Sbjct: 287 QNLMREIIGYHADIICLQEVQLNHFEDFFSPELDKHGYQALYKKRTTEVYTGAPHAIDGC 346
Query: 402 AIYFKKSLFDLDDQISVEFFQPELPILNRDNIGVIVNCRRRIA 530
A +F++ F + VEF + + + +I + +RR+A
Sbjct: 347 ATFFRRDKFSHVKKYEVEFNKAAQSLTD----AIIPSTQRRVA 385
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 541 IVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAV 720
+ VA TH+ + DV+L +++ LL +++ A S P+++ GDFNS P S+
Sbjct: 418 LCVANTHVNVHQDLKDVKLWEVQTLLKGLEKIAV------SADIPMLVCGDFNSVPGSSP 471
Query: 721 INLLDRGRV 747
LL G+V
Sbjct: 472 HGLLAMGKV 480
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 118 DSDETTFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLTKKFADCH 279
DS + F V+SYN+LA Y Y C L W +R + L ++ H
Sbjct: 246 DSQTSFGTFSVLSYNILADAYATSDAYSY--CPTWALSWTYRRQNLMREIIGYH 297
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +1
Query: 541 IVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPES 714
I+V TH+LYNPKR D++L Q++ LL + +A ++ PVI+ GDFNSTP++
Sbjct: 356 IIVCNTHVLYNPKRGDIKLGQVRTLLDRV--YALSKTWNDA---PVIICGDFNSTPKA 408
Score = 45.2 bits (102), Expect = 6e-05
Identities = 22/71 (30%), Positives = 40/71 (56%)
Frame = +3
Query: 294 LQEVQLSHLETFYSKFENIGYQGVFKQKTGDRQDGCAIYFKKSLFDLDDQISVEFFQPEL 473
+++V++ + GY G++K +TG+ DGCAI+++ + F L Q +EF + +L
Sbjct: 264 VKKVEVDKFTDLEQEMATRGYNGIWKMRTGNATDGCAIFWRTARFQLRYQEDIEFNKIDL 323
Query: 474 PILNRDNIGVI 506
RDN+ I
Sbjct: 324 ----RDNVAQI 330
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 139 RFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLTKKF 267
RFKV+SYN+LA YL + H +LY + W R +L +F
Sbjct: 191 RFKVLSYNILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEF 233
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Frame = +3
Query: 246 QTSYQEIRRLSPDILCLQEVQLSHLETFYS-KFENIGYQGVFKQK-----TGDRQ--DGC 401
Q +EI DI+CLQEVQ +H E F++ + + GYQ +FK++ TG+ Q DGC
Sbjct: 289 QNLLREIIGYHADIICLQEVQSNHFEEFFAPELDKHGYQALFKKRTTEVYTGNLQSIDGC 348
Query: 402 AIYFKKSLFDLDDQISVEF 458
A +F++ F + VEF
Sbjct: 349 ATFFRRDKFSHVKKYEVEF 367
Score = 41.5 bits (93), Expect = 8e-04
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 541 IVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAV 720
+ VA TH+ + DV+L Q+ LL +++ A S P+++ GDFN+TP S
Sbjct: 420 LCVANTHINVHQDLKDVKLWQVNTLLKGLEKIAV------SADIPMLVCGDFNATPGSTP 473
Query: 721 INLLDRGRV 747
LL G+V
Sbjct: 474 HGLLAMGKV 482
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 118 DSDETTF-RFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLTKKFADCH 279
DS ++F F V+SYN+LA Y Y C L W +R + L ++ H
Sbjct: 247 DSRNSSFGTFTVLSYNILADTYATSDTYSY--CPTWALSWPYRRQNLLREIIGYH 299
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 31.5 bits (68), Expect = 0.81
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 544 VVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAVI 723
++ THLL+ P + + ++K + + + + G P+IL GD+N + V
Sbjct: 185 LIVNTHLLF-PHDHSLSIVRLKQVYKILQYIEAYQEEHKLGPMPIILCGDWNGSKRGQVY 243
Query: 724 NLLDRGRVRASSLET 768
L R + SS +T
Sbjct: 244 KFL-RSQGFVSSYDT 257
>12_02_1262 +
27415191-27415279,27415367-27415565,27415635-27415775,
27415939-27416003,27416111-27416489,27416688-27417149,
27417226-27417546,27418184-27418501
Length = 657
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Frame = +2
Query: 548 LPQPTYSTIRRERTYDSHKLKYYSPRSI-------DSLISTMG-GSPAI 670
+PQP + R + D+H+LKY S DS IS MG GSP+I
Sbjct: 473 VPQPILAADRIAKPSDNHELKYKSRSQFNTKVIVKDSQISLMGEGSPSI 521
>06_01_0721 -
5255422-5255790,5256287-5256660,5256845-5257192,
5257369-5257497,5257585-5257658,5257745-5257816,
5257901-5257969,5258059-5258130,5258208-5258279,
5258512-5258583,5258735-5258806,5258887-5258958,
5259050-5259121,5259203-5259274,5259427-5259498,
5259599-5259670,5259764-5259832,5260072-5260143,
5260428-5260499,5260579-5260650,5260919-5260990,
5261015-5261161,5261249-5261378,5262212-5262290
Length = 931
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 196 YLYIDCSPRNLKWKHRSRR-LTKKFADCHLTYCASKKFNCRILKRSILNSKTSGTKGSSN 372
YL+ DCSPR + +S+ L K + HLT K C + ++ ++ GT G +
Sbjct: 711 YLHHDCSPRIIHRDVKSKNILLDKDYEAHLTDFGIAKSLC--VSKTHTSTYVMGTIGYID 768
Query: 373 RKPETGRTDALFTSRSLY 426
PE RT L +Y
Sbjct: 769 --PEYARTSRLNEKSDVY 784
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,109,131
Number of Sequences: 37544
Number of extensions: 423202
Number of successful extensions: 1046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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