Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0886.Seq
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20238| Best HMM Match : Toxin_8 (HMM E-Value=0.66) 52 5e-07
SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_19988| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1) 47 2e-05
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_50700| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.022
SB_4969| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-08) 35 0.067
SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06) 29 3.3
SB_56567| Best HMM Match : PDZ (HMM E-Value=5.6e-20) 28 7.7
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16) 28 7.7
SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0) 28 7.7
>SB_20238| Best HMM Match : Toxin_8 (HMM E-Value=0.66)
Length = 491
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/57 (40%), Positives = 38/57 (66%)
Frame = +3
Query: 354 YQGVFKQKTGDRQDGCAIYFKKSLFDLDDQISVEFFQPELPILNRDNIGVIVNCRRR 524
Y+G +K++TG + DGCA ++KKS F VEF + ++ +++RDN+ +IV R R
Sbjct: 2 YKGFYKKRTGKKLDGCATFYKKSRFHHLLTQEVEFCRKDILVMDRDNVALIVVLRPR 58
Score = 48.4 bits (110), Expect = 7e-06
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +1
Query: 535 SSIVVATTHLLYNPKRTDVRLAQIKILLAEI----DRFAYFNNGRESGHFPVILTGDFNS 702
+++ VA THLL+N KR D++L Q+ L AEI + R VIL GDFN
Sbjct: 68 TALCVANTHLLFNKKRGDIKLLQLSSLFAEIQQVTSKVCSSEGSRGIKQCGVILCGDFNM 127
Query: 703 TPESAVINLLDRG 741
TP + +L+ +G
Sbjct: 128 TPWCPLYSLVVQG 140
>SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 48.4 bits (110), Expect = 7e-06
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Frame = +1
Query: 532 GSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRF------AYFNNGRESG-----HFPV 678
G ++V+ H+ ++P+ DV+L Q +L+ E+ + +G ++G P+
Sbjct: 303 GQQVLVSNAHIHWDPEFRDVKLIQTVLLMHELQMILKQYIPGFHPHGGKNGTTPSKSIPI 362
Query: 679 ILTGDFNSTPESAVINLLDRGRV 747
+L GD NS P S VI LD GR+
Sbjct: 363 VLCGDLNSLPNSGVIEFLDNGRI 385
>SB_19988| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1)
Length = 195
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 IRRLSPDILCLQEVQLSHLETFYSKF-ENIGYQGVFKQKTGDRQDGCAIYFKKSLF 428
IR L+ DI CLQE+ + KF +++GY GV+ +K + DG AI++++S F
Sbjct: 1 IRWLNADIFCLQELDDWYYNGIIDKFMDSLGYSGVYMKKADPKLDGLAIFYRRSKF 56
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 598 AQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAVINLLDRGRVRASSLETI 771
AQI + +F P +L GDFN P+ + NLL+ G + +L +
Sbjct: 113 AQILCAAQAMLKFVQSLQSTTDDRVPYVLCGDFNIEPQYPIYNLLEEGTLNKDTLRQL 170
>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1792
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 541 IVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAY-FNNGRESG-HFPVILTGDFNSTPES 714
I V THL Y P +R+ Q I+L + + R+ V+ GDFNSTP +
Sbjct: 240 ICVVNTHLYYRPHSPHIRMLQAAIILNHTKAVVHELTSERDDNIDVAVLFCGDFNSTPHT 299
Query: 715 AVINLLDRGRV 747
+ LL +G V
Sbjct: 300 GLFQLLTKGHV 310
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 246 QTSYQEIRRLSPDILCLQEVQLSHLETFYSK-FENIGYQGVFKQKTGDRQDGCAIYFKKS 422
Q +E+ + DI+CLQE + F E GYQG+ K K G+ +G AI+F +
Sbjct: 118 QVLMKELIGYNADIICLQECGQKLFDGFLLPCMELEGYQGIIKCKAGEIPEGEAIFFNRD 177
Query: 423 LFDLDDQISVEFFQPELPILNRDNI 497
F+L V + L L+++ I
Sbjct: 178 KFELIKTCDVVLRESLLSHLSQEEI 202
>SB_50700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 36.7 bits (81), Expect = 0.022
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Frame = +3
Query: 237 TQIQTSYQEIRRLSPDILCLQEVQLSHLETFYS-KFENIGYQGVFKQKT---------GD 386
T+ Q Q I P+I+CL+EV H F+ + +GY G+F K
Sbjct: 77 TRKQRLIQGILTYEPNIICLEEV--DHFYDFFKPSLDEVGYTGIFVPKEDSPCLKFPGNS 134
Query: 387 RQDGCAIYFKKSLFDLDDQISVEFFQPELPILNR 488
DG AI+F K F L Q S + + + N+
Sbjct: 135 GPDGTAIFFDKQRFKLRKQQSKQLKNSDGTLTNQ 168
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +1
Query: 520 EELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFN 699
+ L S+ THL P D+R AQ K +LA + F E+ V++ GDFN
Sbjct: 177 DNLNKKSLYCCGTHLKAKPAFQDLRSAQGKSVLAFLKDF------MENEQAEVLVCGDFN 230
Query: 700 STPESAVINLLDRG 741
+ P V +++ G
Sbjct: 231 AEPTEPVYQVMEDG 244
>SB_4969| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-08)
Length = 367
Score = 35.1 bits (77), Expect = 0.067
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +1
Query: 598 AQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAVINLLDRGRVRASSLETIRI 777
+Q+K +++ ID+F +E PVILTGDFNS PE+ + +G ASS + +
Sbjct: 1 SQVKKVVSGIDKFL---KQKELHSIPVILTGDFNS-PETNPVYQFVKGSGFASSYKVVN- 55
Query: 778 GNES 789
G E+
Sbjct: 56 GREA 59
>SB_33162| Best HMM Match : EGF (HMM E-Value=1.2e-06)
Length = 313
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 274 SLRISW*DVWICVSTLSSSESNQCRDTDDTPTNTALVHCKTP 149
S+R ++W+CV +S++ CR D+ P N V+ +P
Sbjct: 264 SVRRDQAELWVCVLPEGASKTQICRHHDNGPNNDTSVNHYSP 305
>SB_56567| Best HMM Match : PDZ (HMM E-Value=5.6e-20)
Length = 285
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 331 ILNSKTSGTKGSSNRKPETGRTDALFTSRS 420
IL S T GT+GSS+ P RT+ L T +S
Sbjct: 34 ILKSLTEGTEGSSSSAP-AARTELLSTEKS 62
>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
Length = 501
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 517 AEELPGSSIVVATTHLLYN-PKRTDVRLAQIKILLAEIDRFAYFNNGRE 660
A+ + S + T LLYN +R D+R+ ++ + A +DR+A GR+
Sbjct: 227 ADVVASDSFLNVTQQLLYNILRRNDLRIRELALFKA-VDRWAEHQAGRQ 274
>SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1106
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 261 EIRRLSPDILCLQEVQLSHLETFYSKFENIGYQGVFKQKTGDRQDGCAIYFKKSLFDLDD 440
+IR + PD+ CL E Q + S + +G + GD Q G A +L+ + D
Sbjct: 993 KIREILPDVTCLIEYQATKNAVMQSLEKGVGV--IHIASHGDSQTG-ARSVLATLWTIGD 1049
Query: 441 QISVEFFQ 464
++EF +
Sbjct: 1050 NATLEFME 1057
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,949,502
Number of Sequences: 59808
Number of extensions: 518579
Number of successful extensions: 1429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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