Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0886.Seq
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067946-1|AAC17686.3| 275|Caenorhabditis elegans Hypothetical ... 69 3e-12
Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical pr... 52 6e-07
AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein. 52 6e-07
Z92809-2|CAB07271.1| 628|Caenorhabditis elegans Hypothetical pr... 40 0.003
U80843-11|AAB37970.1| 296|Caenorhabditis elegans Hypothetical p... 34 0.10
AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical... 29 3.9
D49525-1|BAA08470.1| 704|Caenorhabditis elegans TPA-1A protein. 29 5.1
AY081844-1|AAL91661.1| 362|Caenorhabditis elegans heparan 6-O s... 29 5.1
AF078781-2|AAC26916.1| 704|Caenorhabditis elegans Tpa (tetradec... 29 5.1
AC024755-9|AAF59640.2| 362|Caenorhabditis elegans Heparan sulph... 29 5.1
U53335-1|AAA96169.1| 431|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AF067946-1|AAC17686.3| 275|Caenorhabditis elegans Hypothetical
protein W02G9.5 protein.
Length = 275
Score = 69.3 bits (162), Expect = 3e-12
Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = +3
Query: 261 EIRRLSPDILCLQEVQLSH-LETFYSKFENIGYQGVFKQKTGDRQ--DGCAIYFKKSLFD 431
E+ DIL LQEVQ H +E F + GY+GV+KQK G +Q DGCA+++ + F+
Sbjct: 113 ELPTFDADILGLQEVQADHFVEHFQPLMKKYGYEGVYKQKFGTQQKDDGCALFYHPAKFE 172
Query: 432 LDDQISVEFFQPELPILNRDNIGVIVNCRRRIAR 533
L V +F + I NR+NI IV R RI +
Sbjct: 173 LVANQEVNYFISDTAISNRENIAQIVALRCRITK 206
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/68 (42%), Positives = 38/68 (55%)
Frame = +1
Query: 541 IVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGRESGHFPVILTGDFNSTPESAV 720
I+VA THLL+N +R DV+LAQ+ IL A I + PV + GDFN P S V
Sbjct: 209 ILVANTHLLFNEERGDVKLAQLAILFASIHK---MREDFAPMVPPVFVMGDFNIEPNSKV 265
Query: 721 INLLDRGR 744
+ + GR
Sbjct: 266 YDFIVDGR 273
>Z68753-6|CAD45610.1| 597|Caenorhabditis elegans Hypothetical
protein ZC518.3c protein.
Length = 597
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = +1
Query: 520 EELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGR---ESGHFPVILTG 690
+ + G+ +VVAT H+ ++P+ DV+L Q +L E+ R + + PV++ G
Sbjct: 375 DNVVGNPLVVATAHIHWDPEFCDVKLVQSMMLTHEVSRVLEEVSKKYQITQQQVPVLICG 434
Query: 691 DFNSTPESAVINLLDRGRV 747
DFNS P+S V L +G++
Sbjct: 435 DFNSLPDSGVFEYLSKGQI 453
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = +3
Query: 258 QEIRRLSPDILCLQEVQLSHLET-FYSKFENIGYQGVFKQKT-----GDRQ----DGCAI 407
+EIR D++ LQEV+ T F + + +GY G+F+ K+ G+ + DGCAI
Sbjct: 248 KEIRTYEADVITLQEVETEQFRTLFQPELKQLGYAGIFEAKSRAKTMGEEERKYVDGCAI 307
Query: 408 YFKKSLFDLDDQISVEF 458
++K FD+D Q EF
Sbjct: 308 FWKVDKFDMDKQYLFEF 324
>Z68753-5|CAB54512.2| 613|Caenorhabditis elegans Hypothetical
protein ZC518.3b protein.
Length = 613
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = +1
Query: 520 EELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGR---ESGHFPVILTG 690
+ + G+ +VVAT H+ ++P+ DV+L Q +L E+ R + + PV++ G
Sbjct: 391 DNVVGNPLVVATAHIHWDPEFCDVKLVQSMMLTHEVSRVLEEVSKKYQITQQQVPVLICG 450
Query: 691 DFNSTPESAVINLLDRGRV 747
DFNS P+S V L +G++
Sbjct: 451 DFNSLPDSGVFEYLSKGQI 469
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = +3
Query: 258 QEIRRLSPDILCLQEVQLSHLET-FYSKFENIGYQGVFKQKT-----GDRQ----DGCAI 407
+EIR D++ LQEV+ T F + + +GY G+F+ K+ G+ + DGCAI
Sbjct: 264 KEIRTYEADVITLQEVETEQFRTLFQPELKQLGYAGIFEAKSRAKTMGEEERKYVDGCAI 323
Query: 408 YFKKSLFDLDDQISVEF 458
++K FD+D Q EF
Sbjct: 324 FWKVDKFDMDKQYLFEF 340
>Z68753-4|CAB54511.2| 606|Caenorhabditis elegans Hypothetical
protein ZC518.3a protein.
Length = 606
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = +1
Query: 520 EELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGR---ESGHFPVILTG 690
+ + G+ +VVAT H+ ++P+ DV+L Q +L E+ R + + PV++ G
Sbjct: 384 DNVVGNPLVVATAHIHWDPEFCDVKLVQSMMLTHEVSRVLEEVSKKYQITQQQVPVLICG 443
Query: 691 DFNSTPESAVINLLDRGRV 747
DFNS P+S V L +G++
Sbjct: 444 DFNSLPDSGVFEYLSKGQI 462
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = +3
Query: 258 QEIRRLSPDILCLQEVQLSHLET-FYSKFENIGYQGVFKQKT-----GDRQ----DGCAI 407
+EIR D++ LQEV+ T F + + +GY G+F+ K+ G+ + DGCAI
Sbjct: 257 KEIRTYEADVITLQEVETEQFRTLFQPELKQLGYAGIFEAKSRAKTMGEEERKYVDGCAI 316
Query: 408 YFKKSLFDLDDQISVEF 458
++K FD+D Q EF
Sbjct: 317 FWKVDKFDMDKQYLFEF 333
>AY043268-1|AAK85706.1| 606|Caenorhabditis elegans CCR4 protein.
Length = 606
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = +1
Query: 520 EELPGSSIVVATTHLLYNPKRTDVRLAQIKILLAEIDRFAYFNNGR---ESGHFPVILTG 690
+ + G+ +VVAT H+ ++P+ DV+L Q +L E+ R + + PV++ G
Sbjct: 384 DNVVGNPLVVATAHIHWDPEFCDVKLVQSMMLTHEVSRVLEEVSKKYQITQQQVPVLICG 443
Query: 691 DFNSTPESAVINLLDRGRV 747
DFNS P+S V L +G++
Sbjct: 444 DFNSLPDSGVFEYLSKGQI 462
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Frame = +3
Query: 258 QEIRRLSPDILCLQEVQLSHLET-FYSKFENIGYQGVFKQKT-----GDRQ----DGCAI 407
+EIR D++ LQEV+ T F + + +GY G+F+ K+ G+ + DGCAI
Sbjct: 257 KEIRTYEADVITLQEVETEQFRTLFQPELKQLGYAGIFEAKSRAKTMGEEERKYVDGCAI 316
Query: 408 YFKKSLFDLDDQISVEF 458
++K FD+D Q EF
Sbjct: 317 FWKVDKFDMDKQYLFEF 333
>Z92809-2|CAB07271.1| 628|Caenorhabditis elegans Hypothetical
protein R17.2 protein.
Length = 628
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 532 GSSIVVATTHLLYNPKRTDVRLAQI----KILLAEIDRFAYFNNGRESGHFPVILTGDFN 699
G +V THL +NP V++ Q + LL + N G E V+ GDFN
Sbjct: 461 GKLLVCGNTHLHHNPIDEHVKVLQALTCTRKLLEIYEETRELNKGIE---VLVLFGGDFN 517
Query: 700 STPESAVINLLDRGRV 747
STP AV NL+ G +
Sbjct: 518 STPNGAVFNLMSMGNL 533
>U80843-11|AAB37970.1| 296|Caenorhabditis elegans Hypothetical
protein C32B5.15 protein.
Length = 296
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/81 (20%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +3
Query: 282 DILCLQEVQLSHLETFYSKFENIGYQGVFKQKTGDRQDGCAIYFKKSLFDLDDQISVEFF 461
+++ L + ++ L+ +S + N+G ++ Q G+ +D CA ++ ++ ++ +++ + +
Sbjct: 187 EMVKLDTIPITFLDQIFSTWPNLGSLSLYPQIDGELKDECAPGYQLNVENIYQEVNAKPW 246
Query: 462 QPEL-PI--LNRDNIGVIVNC 515
P PI N + + I+NC
Sbjct: 247 DPATRPIDYCNEETLEKIINC 267
>AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical
protein Y43F8C.10 protein.
Length = 250
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +1
Query: 163 VLAQYLLEYHPYLYIDCSPRNLKWKHRSRRLTKKFADCHLTYCASKKFNCRILKRSILNS 342
+L + E Y C L+ K ++ +L+ F C + C + +R LNS
Sbjct: 6 ILPELFGEKRVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIM------VERRRQLNS 59
Query: 343 KTSGTKGSSNRKPETGRTDALFTS 414
+ GS + KP T T AL S
Sbjct: 60 RLMQIDGSRDEKPMTTLTMALTCS 83
>D49525-1|BAA08470.1| 704|Caenorhabditis elegans TPA-1A protein.
Length = 704
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 81 EWDLCWSPVVLGFRALRITFLFNNRRV 1
EW+ CW V R L+I +FN V
Sbjct: 59 EWEKCWDTAVAEGRILQIVLMFNQTPV 85
>AY081844-1|AAL91661.1| 362|Caenorhabditis elegans heparan 6-O
sulfotransferase HST-6 protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 545 TMEDPGNSSATIYNHTDIITVEDRQLRLEELNADLIV 435
T+ED G YN+ DI+ ED LR + + D+IV
Sbjct: 47 TLED-GFHDDDFYNYEDIVQREDTALRFNKTSNDVIV 82
>AF078781-2|AAC26916.1| 704|Caenorhabditis elegans Tpa
(tetradecanoyl phorbol acetate)resistant protein 1,
isoform a protein.
Length = 704
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 81 EWDLCWSPVVLGFRALRITFLFNNRRV 1
EW+ CW V R L+I +FN V
Sbjct: 59 EWEKCWDTAVAEGRILQIVLMFNQTPV 85
>AC024755-9|AAF59640.2| 362|Caenorhabditis elegans Heparan
sulphotransferase protein 6 protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 545 TMEDPGNSSATIYNHTDIITVEDRQLRLEELNADLIV 435
T+ED G YN+ DI+ ED LR + + D+IV
Sbjct: 47 TLED-GFHDDDFYNYEDIVQREDTALRFNKTSNDVIV 82
>U53335-1|AAA96169.1| 431|Caenorhabditis elegans Hypothetical
protein C55C3.4 protein.
Length = 431
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +1
Query: 70 KIPLNFRTWETVGKKTDSDET-TFRFKVVSYNVLAQYLLEYHPYLYIDCSPRNLKWKHR- 243
K+P+ + ET+ + +T F F V+++ + Y + I+ + + L+
Sbjct: 282 KVPIRWLPPETIRSGLYTPKTDVFAFGVMAWEITEDGKEPYPGFKVIEVAMKVLQGYRMP 341
Query: 244 -SRRLTKKFADCHLTYCASKKFNCRILKRSILNSKTSGTK 360
S + K+FA+ LT C +K+ R+ + I S K
Sbjct: 342 FSPEVNKEFAEFILTKCWPEKYEDRLPMKDICKWMKSSVK 381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,407,314
Number of Sequences: 27780
Number of extensions: 383579
Number of successful extensions: 1190
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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