Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0886.Seq
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 73  IPLNFRTWETVGK--KTDSDETTFRFKVVSYNVLAQYLLEYHPYLYI--DCSPRNLKWKH 240
           + L  RT ET G+  K +  E  +R+  +  N  +Q+LLEY   + +     P N+ +  
Sbjct: 538 VNLTSRT-ETTGEPGKINVSEDAYRYLCMPENQDSQFLLEYRGPVTMKGKSEPMNVWFLS 596

Query: 241 RSRRLT 258
           R R L+
Sbjct: 597 RERELS 602


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 73  IPLNFRTWETVGK--KTDSDETTFRFKVVSYNVLAQYLLEYHPYLYI--DCSPRNLKWKH 240
           + L  RT ET G+  K +  E  +R+  +  N  +Q+LLEY   + +     P N+ +  
Sbjct: 538 VNLTSRT-ETTGEPGKINVSEDAYRYLCMPENQDSQFLLEYRGPVTMKGKSEPMNVWFLS 596

Query: 241 RSRRLT 258
           R R L+
Sbjct: 597 RERELS 602


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -1

Query: 149 TLNLNVV-SSESVFFPTVSQVLKLSGIFVGLLWCSD--FAPSESHF 21
           T+ LN     E + F    +VL LSG F   +W  D  FA  ++ F
Sbjct: 85  TMYLNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFANDKNSF 130


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +1

Query: 154 SYNVLAQYLLEYHPYLYIDCSPRNLKWKHRSRRL 255
           +Y  + +Y   + PY  ++C+     W H S  +
Sbjct: 154 TYTPVCEYDHTWWPYDILNCTIHIASWSHGSNEI 187


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 371 FEDPLVPDVFEFRIER 324
           F+DPL+P  F  RI R
Sbjct: 155 FKDPLIPVHFALRIYR 170


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 371 FEDPLVPDVFEFRIER 324
           F+DPL+P  F  RI R
Sbjct: 155 FKDPLIPVHFALRIYR 170


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 371 FEDPLVPDVFEFRIER 324
           F+DPL+P  F  RI R
Sbjct: 206 FKDPLIPVHFALRIYR 221


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 371 FEDPLVPDVFEFRIER 324
           F+DPL+P  F  RI R
Sbjct: 155 FKDPLIPVHFALRIYR 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,351
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)