Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0885.Seq
(655 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 157 3e-37
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 152 8e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 150 2e-35
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 143 4e-33
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 130 3e-29
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 124 2e-27
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 118 1e-25
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 116 4e-25
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 116 7e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 110 3e-23
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 103 5e-21
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 92 9e-18
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 78 2e-13
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 77 3e-13
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 71 2e-11
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 71 2e-11
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 69 7e-11
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 68 2e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 64 4e-09
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 61 2e-08
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 60 3e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 58 2e-07
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 57 4e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 56 1e-06
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 55 1e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 3e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 54 4e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 50 4e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 2e-04
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 46 6e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 44 0.004
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 42 0.017
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 37 0.37
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 36 1.1
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 34 3.4
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 33 4.5
UniRef50_Q0RWF5 Cluster: Transposase; n=7; Rhodococcus|Rep: Tran... 33 6.0
UniRef50_Q556N8 Cluster: Putative uncharacterized protein; n=2; ... 33 7.9
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 7.9
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 157 bits (380), Expect = 3e-37
Identities = 72/88 (81%), Positives = 79/88 (89%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+K
Sbjct: 12 LAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVK 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTMNCF 265
VDGKVRTDPTYPAG+MDV+++EKT F
Sbjct: 72 VDGKVRTDPTYPAGYMDVITLEKTGEFF 99
Score = 142 bits (343), Expect = 9e-33
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPDPLI
Sbjct: 97 EFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHA 156
Query: 436 NDSIQLDIATTKIMDFIKFESGNL 507
NDS+Q+DIA+ KI D+IKF+SGNL
Sbjct: 157 NDSVQVDIASGKITDYIKFDSGNL 180
Score = 97.5 bits (232), Expect = 2e-19
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = +3
Query: 504 LVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
L MITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIG
Sbjct: 180 LCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIG 229
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 152 bits (368), Expect = 8e-36
Identities = 69/82 (84%), Positives = 75/82 (91%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+D
Sbjct: 14 APKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKID 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKT 253
GKVRTD TYPAGFMDV+SI+KT
Sbjct: 74 GKVRTDITYPAGFMDVISIDKT 95
Score = 143 bits (346), Expect = 4e-33
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPDPLIKV
Sbjct: 97 ENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKV 156
Query: 436 NDSIQLDIATTKIMDFIKFESGNL 507
ND+IQ+D+ T KI DFIKF++GNL
Sbjct: 157 NDTIQIDLETGKITDFIKFDTGNL 180
Score = 86.6 bits (205), Expect = 5e-16
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +3
Query: 504 LVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
L M+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IG
Sbjct: 180 LCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIG 229
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 150 bits (364), Expect = 2e-35
Identities = 68/82 (82%), Positives = 74/82 (90%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+D
Sbjct: 14 APKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKID 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKT 253
GKVRTD TYP GFMDV+SI+KT
Sbjct: 74 GKVRTDITYPTGFMDVISIDKT 95
Score = 96.3 bits (229), Expect(2) = 6e-27
Identities = 39/61 (63%), Positives = 52/61 (85%)
Frame = +1
Query: 325 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 504
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 505 L 507
+
Sbjct: 212 M 212
Score = 89.0 bits (211), Expect = 9e-17
Identities = 35/50 (70%), Positives = 46/50 (92%)
Frame = +3
Query: 504 LVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
+ M+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IG
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIG 261
Score = 47.6 bits (108), Expect(2) = 6e-27
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAK 327
E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 97 EHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 143 bits (346), Expect = 4e-33
Identities = 66/88 (75%), Positives = 74/88 (84%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+
Sbjct: 12 LNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQ 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTMNCF 265
VDGKVRTD TYPAGFMDVVSI KT F
Sbjct: 72 VDGKVRTDKTYPAGFMDVVSIPKTNENF 99
Score = 122 bits (293), Expect = 1e-26
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK
Sbjct: 97 ENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKP 156
Query: 436 NDSIQLDIATTKIMDFIKFESGNLL 510
ND+I+LD+ KI++FIKF+ GN++
Sbjct: 157 NDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 81.0 bits (191), Expect = 2e-14
Identities = 35/53 (66%), Positives = 43/53 (81%)
Frame = +3
Query: 495 VWELVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
V +VM+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IG
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIG 229
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 130 bits (314), Expect = 3e-29
Identities = 57/88 (64%), Positives = 67/88 (76%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R IK
Sbjct: 12 LNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIK 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTMNCF 265
+DGK+RTD YP GFMDV+SI +T F
Sbjct: 72 IDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 104 bits (249), Expect = 2e-21
Identities = 44/83 (53%), Positives = 64/83 (77%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP P ++
Sbjct: 97 ENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQA 156
Query: 436 NDSIQLDIATTKIMDFIKFESGN 504
ND+I+L++ T KI+DF+KF+ GN
Sbjct: 157 NDTIKLNLETGKIVDFVKFDIGN 179
Score = 79.0 bits (186), Expect = 9e-14
Identities = 34/48 (70%), Positives = 40/48 (83%)
Frame = +3
Query: 510 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IG
Sbjct: 182 MMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIG 229
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 124 bits (299), Expect = 2e-27
Identities = 53/77 (68%), Positives = 65/77 (84%)
Frame = +1
Query: 277 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 456
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 457 IATTKIMDFIKFESGNL 507
+ T KI DF KF++GNL
Sbjct: 136 LETGKITDFFKFDTGNL 152
Score = 110 bits (264), Expect = 3e-23
Identities = 50/62 (80%), Positives = 54/62 (87%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q IK+D
Sbjct: 14 APKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMD 73
Query: 188 GK 193
GK
Sbjct: 74 GK 75
Score = 84.6 bits (200), Expect = 2e-15
Identities = 33/50 (66%), Positives = 44/50 (88%)
Frame = +3
Query: 504 LVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
L M+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IG
Sbjct: 152 LCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIG 201
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 118 bits (284), Expect = 1e-25
Identities = 54/88 (61%), Positives = 65/88 (73%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL+K
Sbjct: 26 LTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVK 85
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTMNCF 265
VDGKVRT+ YP G MDV+ + K+ F
Sbjct: 86 VDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 95.9 bits (228), Expect = 7e-19
Identities = 40/84 (47%), Positives = 61/84 (72%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
ELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP ++V
Sbjct: 111 ELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRV 170
Query: 436 NDSIQLDIATTKIMDFIKFESGNL 507
+D+++ +I T ++ IKF+ G++
Sbjct: 171 HDALKFNIKTGEVESVIKFKVGDV 194
Score = 68.1 bits (159), Expect = 2e-10
Identities = 30/53 (56%), Positives = 40/53 (75%)
Frame = +3
Query: 495 VWELVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
V ++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG
Sbjct: 191 VGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIG 243
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 116 bits (280), Expect = 4e-25
Identities = 57/77 (74%), Positives = 62/77 (80%)
Frame = +2
Query: 20 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 199
WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q IKVDGK+R
Sbjct: 29 WMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFIKVDGKIR 87
Query: 200 TDPTYPAGFMDVVSIEK 250
TD P MDV+SI+K
Sbjct: 88 TDNNLPYWIMDVISIDK 104
Score = 105 bits (252), Expect = 9e-22
Identities = 49/94 (52%), Positives = 65/94 (69%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD T+R+PD LIKV
Sbjct: 107 EDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKV 166
Query: 436 NDSIQLDIATTKIMDFIKFESGNLL*SREAVTWG 537
ND+IQ+D+ T KI +KF++GNL WG
Sbjct: 167 NDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Score = 54.4 bits (125), Expect = 2e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +3
Query: 504 LVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 623
L ++TGG N GR+G I +RERHP SFD H+KD+ ++F+
Sbjct: 189 LCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFS 228
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 116 bits (278), Expect = 7e-25
Identities = 55/88 (62%), Positives = 63/88 (71%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q L+
Sbjct: 9 LYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVH 68
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTMNCF 265
VD R D YPAGFMDVV I KT + F
Sbjct: 69 VDNHPRRDGKYPAGFMDVVEIPKTGDRF 96
Score = 78.2 bits (184), Expect = 2e-13
Identities = 37/80 (46%), Positives = 48/80 (60%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 441
FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPDP + D
Sbjct: 96 FRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGD 155
Query: 442 SIQLDIATTKIMDFIKFESG 501
+I ++ K +D IK G
Sbjct: 156 TIVYNVKEKKCVDLIKNRQG 175
Score = 67.7 bits (158), Expect = 2e-10
Identities = 28/49 (57%), Positives = 38/49 (77%)
Frame = +3
Query: 507 VMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
V++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+IG
Sbjct: 178 VIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIG 226
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 110 bits (264), Expect = 3e-23
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+ I
Sbjct: 12 LNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIY 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKT 253
VDGKVR D +PAG MDV+SI+ T
Sbjct: 72 VDGKVRADKNFPAGVMDVISIKTT 95
Score = 110 bits (264), Expect = 3e-23
Identities = 49/84 (58%), Positives = 65/84 (77%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LIK
Sbjct: 97 ENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKS 156
Query: 436 NDSIQLDIATTKIMDFIKFESGNL 507
NDSI LD+ K++DFIKF G+L
Sbjct: 157 NDSIVLDLLNNKVIDFIKFSIGSL 180
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +3
Query: 495 VWELVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
+ L ++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IG
Sbjct: 177 IGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIG 229
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 103 bits (246), Expect = 5e-21
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 441
FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P IK+ D
Sbjct: 211 FRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGD 270
Query: 442 SIQLDIATTKIMDFIKFESGNL 507
+++ D+ KI +F ESGN+
Sbjct: 271 TLKYDLVNNKIENFAHLESGNV 292
Score = 84.6 bits (200), Expect = 2e-15
Identities = 43/74 (58%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +2
Query: 50 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 223
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 224 FMDVVSIEKTMNCF 265
MDVV IEKT F
Sbjct: 198 LMDVVRIEKTDQSF 211
Score = 64.9 bits (151), Expect = 2e-09
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = +3
Query: 513 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G
Sbjct: 295 IQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLG 341
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 92.3 bits (219), Expect = 9e-18
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++ IKV+
Sbjct: 14 APKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVN 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKT 253
G+VRT+ +P G DVVSIEKT
Sbjct: 74 GRVRTNSHFPVGLFDVVSIEKT 95
Score = 62.9 bits (146), Expect = 6e-09
Identities = 29/77 (37%), Positives = 52/77 (67%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP I +
Sbjct: 97 EHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDL 155
Query: 436 NDSIQLDIATTKIMDFI 486
+I++ T+K++++I
Sbjct: 156 GYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 78.2 bits (184), Expect = 2e-13
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 LNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 178
L AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+ + I
Sbjct: 15 LAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEI 74
Query: 179 KVDGKVRTDPTYPAGFMDVVSIEKT 253
VDG VR +P +P G MDVV I +T
Sbjct: 75 YVDGVVRKEPKFPVGIMDVVEIPRT 99
Score = 32.7 bits (71), Expect = 7.9
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRYPDP---- 423
+R++ + R + I+ EEA+ K+C++K + HDG+ + DP
Sbjct: 103 YRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPK 162
Query: 424 --LIKVNDSIQLDI------ATTKIMDFIKFESG 501
+ V DS+ L++ + K++D I FE G
Sbjct: 163 EDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEG 196
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 77.4 bits (182), Expect = 3e-13
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 APKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 184
AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ + +KV
Sbjct: 9 APAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKV 68
Query: 185 DGKVRTDPTYPAGFMDVVSIEKT 253
DG VR D +P G MDV+ I T
Sbjct: 69 DGVVRRDYKFPVGLMDVIEIVPT 91
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 71.3 bits (167), Expect = 2e-11
Identities = 31/79 (39%), Positives = 47/79 (59%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
+P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ + +KVD
Sbjct: 9 SPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVD 68
Query: 188 GKVRTDPTYPAGFMDVVSI 244
GKVR D YP G MDV+ +
Sbjct: 69 GKVRRDYKYPVGLMDVIEL 87
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++ + +
Sbjct: 13 LAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFR 72
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKT 253
VDG VR D +P GFMDV+ + T
Sbjct: 73 VDGVVRKDYKFPVGFMDVIEVVDT 96
Score = 44.0 bits (99), Expect = 0.003
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 504 LVMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIG 653
+ +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 189 IAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG 239
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 69.3 bits (162), Expect = 7e-11
Identities = 34/81 (41%), Positives = 48/81 (59%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++ I
Sbjct: 13 LAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKIL 72
Query: 182 VDGKVRTDPTYPAGFMDVVSI 244
+DG R + +PAG MDV+SI
Sbjct: 73 IDGLKRKEYKHPAGLMDVLSI 93
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 501 ELVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
+L ITGG+++G IV E DIV +++ G F T VFI+G
Sbjct: 186 KLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVG 236
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/79 (41%), Positives = 47/79 (59%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+ R+I+VD
Sbjct: 17 APPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVD 76
Query: 188 GKVRTDPTYPAGFMDVVSI 244
G+V TD +P G MDV+ I
Sbjct: 77 GRVVTDYKFPVGLMDVLHI 95
Score = 37.1 bits (82), Expect = 0.37
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 420
+R++ D + I PEEA YKL +++R T HDGR + Y
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161
Query: 421 PL-IKVNDSIQLDIATTKIMDFIKFESGNL 507
+ K D++ + I I+ + FE G L
Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGTL 191
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 63.7 bits (148), Expect = 4e-09
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
APK W + + +PS G H + L L + +R+ LK A E +I+ + VD
Sbjct: 15 APKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVD 74
Query: 188 GKVRTDPTYPAGFMDVVSIEKT 253
G+V D +P GFMD++ I KT
Sbjct: 75 GRVIKDYKFPVGFMDIIEIPKT 96
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ + + VD
Sbjct: 11 APRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVD 70
Query: 188 GKVRTDPTYPAGFMDVVSI 244
GKVR D Y G D +SI
Sbjct: 71 GKVRKDYRYTVGMFDTISI 89
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 60.5 bits (140), Expect = 3e-08
Identities = 30/63 (47%), Positives = 37/63 (58%)
Frame = +2
Query: 56 RPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 235
R GPHK++E +PL I L+ LK T E +I+ + VDGKVR D YP G MDV
Sbjct: 25 RSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDV 84
Query: 236 VSI 244
V I
Sbjct: 85 VEI 87
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 57.6 bits (133), Expect = 2e-07
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = +2
Query: 59 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 238
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 239 SIEKTMNCFV 268
SI+ N ++
Sbjct: 88 SIDTLENDYI 97
Score = 35.9 bits (79), Expect = 0.85
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 268 LIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 444
++YD KG+ I + P KL K VK+ G + L HDG+TI I +D
Sbjct: 98 IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVTDRKDINTSDV 156
Query: 445 IQLDIATTKIMDFIKFESGN 504
+ + I +I + +K G+
Sbjct: 157 LLMKIPDLEIENVLKIAEGD 176
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 56.8 bits (131), Expect = 4e-07
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L P++W L + ++ +P+ G H C+PL + LR+ L A E +++ R +
Sbjct: 9 LTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQVL 68
Query: 182 VDGKVRTDPTYPAGFMDVVSI-EKTMNCFV 268
VDG++ TD G MDV+++ E + C +
Sbjct: 69 VDGRIETDLGRGVGLMDVLTVGEDSFRCIL 98
Score = 36.7 bits (81), Expect = 0.49
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 438
FR I DV G+ I+ + A KLC+V +T + HDGR I D L
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153
Query: 439 DSIQLDIATTKIMDFIKFESG 501
D++ + + + F G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/83 (36%), Positives = 42/83 (50%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D KV
Sbjct: 91 ESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKV 150
Query: 436 NDSIQLDIATTKIMDFIKFESGN 504
D + + KI + IK + GN
Sbjct: 151 GDVWAVSVPDMKISEIIKMQPGN 173
Score = 47.2 bits (107), Expect = 3e-04
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = +2
Query: 47 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 226
+ P P+ G H + + L+ +R+ LK + E +I+ L+KVDGK + + GF
Sbjct: 23 WGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGF 82
Query: 227 MDVVSI 244
MDV+ I
Sbjct: 83 MDVIEI 88
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 55.2 bits (127), Expect = 1e-06
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
++ PK+W + K + GPH + +PL + LR+ L E +++ + +
Sbjct: 8 ISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVL 67
Query: 182 VDGKVRTDPTYPAGFMDVVSI 244
VDG R D +P G MD+++I
Sbjct: 68 VDGVARKDLRFPVGLMDIITI 88
Score = 32.7 bits (71), Expect = 7.9
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 441
+R++ D K R ++++ A KLC+++ + + + +DG I + D
Sbjct: 95 YRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNIIGSNNY-NTKD 152
Query: 442 SIQLDIATTKIMDFIKFESGNL 507
SI L + K++ IK+E GNL
Sbjct: 153 SIILSVPDKKVVKHIKYEVGNL 174
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R +
Sbjct: 7 MTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQVL 65
Query: 182 VDGKVRTDPTYPAGFMDVVSIEK 250
++G + TD D++S K
Sbjct: 66 LNGHIVTDEHIGIDVFDIISFPK 88
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 53.6 bits (123), Expect = 4e-06
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L+ PK+W + + G + GPH LPL + +R+ LK E +I+ + +
Sbjct: 7 LSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVL 66
Query: 182 VDGKVRTDPTYPAGFMDVVSI 244
VDG R D +P G DV+++
Sbjct: 67 VDGISRKDLRFPVGLFDVITL 87
Score = 39.1 bits (87), Expect = 0.091
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E +R++ D KGR ++++ KLC++ T L +DG I +
Sbjct: 92 EAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSNDY-GT 149
Query: 436 NDSIQLDIATTKIMDFIKFESGNL 507
DS+ L I ++ +KFE GNL
Sbjct: 150 KDSLILSIPDKHVVKHLKFEVGNL 173
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 50.4 bits (115), Expect = 4e-05
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 LNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 178
L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++ +
Sbjct: 12 LAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKV 71
Query: 179 KVDGKVRTDPTYPAGFMDVVSI 244
VDG+ D +P G DV++I
Sbjct: 72 LVDGRPIKDYKFPVGLFDVLAI 93
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 441
+R++ G+ T++ I E K+CKV ++ ++T D R ++ IKV D
Sbjct: 99 YRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVED 158
Query: 442 SIQLDIATTKIMDFIKFESGNL 507
S+ + +I+ +KFE G+L
Sbjct: 159 SLLIKTINDEIVYALKFEVGSL 180
Score = 36.7 bits (81), Expect = 0.49
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 41 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 220
G++ + S+GPH + + L+ ++ A E K+VK + V+GK +P
Sbjct: 25 GIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPI 84
Query: 221 GFMDVVS 241
MD +S
Sbjct: 85 SLMDTIS 91
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 46.4 bits (105), Expect = 6e-04
Identities = 25/79 (31%), Positives = 40/79 (50%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L+ VD
Sbjct: 10 APRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVD 69
Query: 188 GKVRTDPTYPAGFMDVVSI 244
GKV + GFMD +++
Sbjct: 70 GKVVKERRRGIGFMDTLTV 88
Score = 35.5 bits (78), Expect = 1.1
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +1
Query: 274 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 453
YD KG+ I E KL +VK + HDG T+ IK DS+ +
Sbjct: 97 YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156
Query: 454 DIATTKIMDFIKFESGN 504
I +I+D +KF GN
Sbjct: 157 KIPKKEIVDVLKFAPGN 173
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 43.6 bits (98), Expect = 0.004
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
L+ P +W +++ + + GPH +PL+I LR+ L YA E + + +
Sbjct: 8 LSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVL 66
Query: 182 VDGKVRTDPTYPAGFMDVVS 241
++GK +D P G D+++
Sbjct: 67 INGKAISDEERPVGMFDILA 86
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 41.5 bits (93), Expect = 0.017
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP W + + G + G H +P + LR+ L T E K + ++VD
Sbjct: 15 APSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNVEVD 74
Query: 188 GKVRTDPTYPAGFMDVVSIEKT 253
G RT + G MDVV + T
Sbjct: 75 GVKRTSLHHGIGLMDVVELGGT 96
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 37.1 bits (82), Expect = 0.37
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -3
Query: 650 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHNKFPDSNL 486
D EHV + R + ++ GVL VHN EG + LA D V + DH + D L
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVEL 107
Score = 35.5 bits (78), Expect = 1.1
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = -2
Query: 495 LKLDEVHNLRSCNV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLL 316
++LD + +L +V +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 105 VELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFD 164
Query: 315 RGDTVDCESALNIID*TKQFI-VFSIETTSINP 220
D V ES+L ++D + FI +F + S P
Sbjct: 165 SLDAVHNESSLGVVDEPEVFIALFDGDDVSPKP 197
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 35.5 bits (78), Expect = 1.1
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -1
Query: 268 DETVHSLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQA 89
++ V + N +NI + I + N P E LFH F DFVSG ++ I + + +
Sbjct: 48 NDQVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRK 107
Query: 88 LAQLV 74
+AQ +
Sbjct: 108 IAQFI 112
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 33.9 bits (74), Expect = 3.4
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 441
+R+ DVKG I E AK +LCK++ T L G + D K D
Sbjct: 94 YRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LADNTYKAKD 152
Query: 442 SIQLDIATT-----KIMDFIKFESGNL 507
S+ + + T +I+D + GN+
Sbjct: 153 SVVVTLGTDGEDRFRIVDHFPYAEGNV 179
Score = 32.7 bits (71), Expect = 7.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 504 LVMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIG 653
+ MI GG++ G+VG IV R S ++ DS G F T VF++G
Sbjct: 179 VAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVG 230
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 33.5 bits (73), Expect = 4.5
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +2
Query: 62 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 241
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 242 IE 247
IE
Sbjct: 158 IE 159
>UniRef50_Q0RWF5 Cluster: Transposase; n=7; Rhodococcus|Rep:
Transposase - Rhodococcus sp. (strain RHA1)
Length = 384
Score = 33.1 bits (72), Expect = 6.0
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 498 WELVMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 602
WE +I G RNL +GT+V ER G+ +VH+ D
Sbjct: 236 WEGDLIVGKRNLSAIGTLV--ERSTGTVMLVHLPD 268
>UniRef50_Q556N8 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 1536
Score = 32.7 bits (71), Expect = 7.9
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 271 LDETVHSLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQ 92
+D +++ N+ KS F I LY+ H F++ S +SIL Q NH +
Sbjct: 1227 IDNVINNEYGNGNLLKSLESMSAENGFHIGLYKIYEHYFKNVYSMKSILHNQEQLNHYSK 1286
Query: 91 ALAQL 77
L +L
Sbjct: 1287 KLLEL 1291
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 7.9
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 23 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 184
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,339,453
Number of Sequences: 1657284
Number of extensions: 16080779
Number of successful extensions: 49793
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 47116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49757
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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