Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0885.Seq
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 139 3e-34
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 138 6e-34
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 138 9e-34
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.77
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 7.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.2
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 9.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.5
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 9.5
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 139 bits (337), Expect = 3e-34
Identities = 61/82 (74%), Positives = 69/82 (84%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVD
Sbjct: 14 APHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVD 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKT 253
GKVRTD T+P GFMDV+S+EKT
Sbjct: 74 GKVRTDSTFPTGFMDVISVEKT 95
Score = 137 bits (332), Expect = 1e-33
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 97 EHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKV 156
Query: 436 NDSIQLDIATTKIMDFIKFES 498
ND+I+L++ T KI FIKF++
Sbjct: 157 NDTIKLNLETNKIESFIKFDT 177
Score = 80.2 bits (189), Expect = 2e-16
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +3
Query: 507 VMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
VM+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 138 bits (334), Expect = 6e-34
Identities = 60/82 (73%), Positives = 69/82 (84%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVD
Sbjct: 14 APHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVD 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKT 253
GKVRTD T+P GFMDV+S++KT
Sbjct: 74 GKVRTDSTFPTGFMDVISVDKT 95
Score = 137 bits (332), Expect = 1e-33
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 97 EHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKV 156
Query: 436 NDSIQLDIATTKIMDFIKFES 498
ND+I+L++ T KI FIKF++
Sbjct: 157 NDTIKLNLETNKIESFIKFDT 177
Score = 80.2 bits (189), Expect = 2e-16
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +3
Query: 507 VMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
VM+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 138 bits (333), Expect = 9e-34
Identities = 60/82 (73%), Positives = 69/82 (84%)
Frame = +2
Query: 8 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 187
AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLI+VD
Sbjct: 14 APHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVD 73
Query: 188 GKVRTDPTYPAGFMDVVSIEKT 253
GKVRTD T+P GFMDV+S+EKT
Sbjct: 74 GKVRTDSTFPTGFMDVISVEKT 95
Score = 137 bits (332), Expect = 1e-33
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 97 EHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKV 156
Query: 436 NDSIQLDIATTKIMDFIKFES 498
ND+I+L++ T KI FIKF++
Sbjct: 157 NDTIKLNLETNKIESFIKFDT 177
Score = 80.2 bits (189), Expect = 2e-16
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +3
Query: 507 VMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
VM+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 647 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 549
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 223 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 68
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 429 QSQRFHPVRHCNYED 473
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 396 WPHHPLPRPTYQSQR 440
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 521 SRDHNKFPDSNLMKSIIFVVAMSNWMESLTLISG 420
SR +N+ D N++ S + A S W+ I+G
Sbjct: 2423 SRIYNENSDENILCSCFYTGANSEWLHKNLFITG 2456
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 399 PHHPLPRPTYQSQRFHPVRHCNYEDY 476
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 324 SLLRGDTVDCESALNIID*TKQ 259
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 570 DVSRGTRWCPHAPSYGLP*S*QVPRLKLDEVHNLRSC 460
D+++ TRW P GL +PR D+VH LR C
Sbjct: 1201 DLAQLTRWSP-MDIQGLQ---DIPRPLRDKVHILRDC 1233
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 98 LVIFLRNRLKYALTGNEVLKIV 163
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 543 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 638
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 402 HHPLPRPTYQSQRFHPVR 455
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,866
Number of Sequences: 5004
Number of extensions: 62897
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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