Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0885.Seq
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 140 9e-34
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 140 9e-34
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 140 9e-34
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.80
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 1.9
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.3
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.3
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.6
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010... 28 7.5
08_01_0220 - 1751367-1752854 28 7.5
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 7.5
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 9.9
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 9.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 140 bits (339), Expect = 9e-34
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR +
Sbjct: 28 LNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVM 87
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKT 253
VDGKVRTD TYPAGFMDVVSI KT
Sbjct: 88 VDGKVRTDKTYPAGFMDVVSIAKT 111
Score = 123 bits (297), Expect = 1e-28
Identities = 53/85 (62%), Positives = 69/85 (81%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK
Sbjct: 113 ENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKA 172
Query: 436 NDSIQLDIATTKIMDFIKFESGNLL 510
ND+I++D+ T KI+DFIKF+ GN++
Sbjct: 173 NDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 79.4 bits (187), Expect = 2e-15
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +3
Query: 495 VWELVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
V +VM+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NVF IG
Sbjct: 193 VGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIG 245
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 140 bits (339), Expect = 9e-34
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR +
Sbjct: 12 LNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVL 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKT 253
VDGKVRTD TYPAGFMDV+SI KT
Sbjct: 72 VDGKVRTDKTYPAGFMDVISIPKT 95
Score = 119 bits (287), Expect = 2e-27
Identities = 50/85 (58%), Positives = 68/85 (80%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK
Sbjct: 97 ENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKA 156
Query: 436 NDSIQLDIATTKIMDFIKFESGNLL 510
ND+I++D+ T KI+DFIKF+ GN++
Sbjct: 157 NDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +3
Query: 495 VWELVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
V +VM+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IG
Sbjct: 177 VGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIG 229
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 140 bits (339), Expect = 9e-34
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = +2
Query: 2 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR +
Sbjct: 12 LNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVL 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKT 253
VDGKVRTD TYPAGFMDV+SI KT
Sbjct: 72 VDGKVRTDKTYPAGFMDVISIPKT 95
Score = 120 bits (289), Expect = 1e-27
Identities = 51/85 (60%), Positives = 68/85 (80%)
Frame = +1
Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK
Sbjct: 97 ENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKA 156
Query: 436 NDSIQLDIATTKIMDFIKFESGNLL 510
ND+I++D+ T KI+DFIKF+ GN++
Sbjct: 157 NDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 79.0 bits (186), Expect = 3e-15
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +3
Query: 495 VWELVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
V +VM+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IG
Sbjct: 177 VGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIG 229
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 113 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 12
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 646 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 524
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 10 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 174
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 544 APSCPARDI--PAPSTLCTSRTPRDTPSP 624
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 262 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 366
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>10_06_0112 +
10899079-10900656,10900761-10900920,10900948-10901028,
10901264-10901517
Length = 690
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 593 VHNVEGAGMSLAGHDGAHTPQVTASRDHNKFPDSNL 486
+H + GA S+A +G ++ R HNKF S++
Sbjct: 532 IHVICGANESVADRNGPELSRINWPRSHNKFHYSHI 567
>08_01_0220 - 1751367-1752854
Length = 495
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Frame = +1
Query: 316 EEAKYKLCKVKRVATGPKNVPY-----------LVTHDGRTIRYPDPLIKVNDSIQLD-- 456
+ A K+C+ + V + P+ P L+ HDGR + PDPL + ++ L
Sbjct: 190 QPAFMKICQERHVVSTPEKAPAAPLPRSEYLRPLIFHDGRLVGRPDPLACLAVALWLPLG 249
Query: 457 --IATTKIM-DFIKFESGNLL 510
+A T+I+ F+ + G LL
Sbjct: 250 AALAVTRILIAFLPYSVGLLL 270
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 621 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 526
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 158 FSGLRFRSKHTSDDSSGKSPGASTRATCG 72
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 232 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 137
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,894,018
Number of Sequences: 37544
Number of extensions: 472215
Number of successful extensions: 1490
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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