Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0885.Seq
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             160   8e-40
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  29   2.5  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      29   3.3  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.4  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  160 bits (389), Expect = 8e-40
 Identities = 73/84 (86%), Positives = 78/84 (92%)
 Frame = +2

Query: 2   LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
           LNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQRLIK
Sbjct: 436 LNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIK 495

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKT 253
           +DGKVRTD TYPAGFMDVV+I+KT
Sbjct: 496 IDGKVRTDTTYPAGFMDVVTIDKT 519



 Score =  131 bits (316), Expect = 6e-31
 Identities = 57/84 (67%), Positives = 71/84 (84%)
 Frame = +1

Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
           E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPDP IKV
Sbjct: 521 ENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKV 580

Query: 436 NDSIQLDIATTKIMDFIKFESGNL 507
           ND++ +DI T K++D+IKF++GN+
Sbjct: 581 NDTVVIDIKTGKVIDYIKFDTGNM 604



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 33/50 (66%), Positives = 42/50 (84%)
 Frame = +3

Query: 504 LVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
           + M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IG
Sbjct: 604 MAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIG 653


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 545 AHTPQVTASRDHNKFPDSNLMKSIIFVVAMSNW 447
           +H+P +T + +H++F     M++++ +V   NW
Sbjct: 168 SHSPWITVNGEHSEFIQQQAMENLLQLVCTVNW 200


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 333 LVLSLLRGDTVDCESALNIID*TKQFIVFSIETTSINPAG*VGSVLTFPS 184
           L   L + + V C SA + ID  + ++VF     ++ P   V S+L FPS
Sbjct: 512 LGFDLAKVEEVVCPSAKSTID-VQNYVVFKQIPVNVQPKNGVKSMLAFPS 560


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 112 EES--SEVCFDRKRSPENCE 165
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 189 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 73
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 623  GEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHNKFPDSNLMKSI 474
            GEG++   L+++N          H  AH+     + D NK PD +L+K I
Sbjct: 922  GEGIAEIQLEMYNYR------QDHHRAHSNSFCVNNDLNKKPDRSLVKKI 965


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,714,904
Number of Sequences: 59808
Number of extensions: 532849
Number of successful extensions: 1478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)