Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0885.Seq
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   123   1e-28
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   0.42 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.0  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    27   8.8  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    27   8.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  123 bits (297), Expect = 1e-28
 Identities = 58/88 (65%), Positives = 68/88 (77%)
 Frame = +2

Query: 2   LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
           L AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR+++
Sbjct: 11  LAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVR 70

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTMNCF 265
           VDGKVRT   +P GFMDVV+IE+T   F
Sbjct: 71  VDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  113 bits (273), Expect = 8e-26
 Identities = 52/84 (61%), Positives = 62/84 (73%)
 Frame = +1

Query: 256 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 435
           E FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP +KV
Sbjct: 96  EYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKV 155

Query: 436 NDSIQLDIATTKIMDFIKFESGNL 507
           ND+I  +I+T KI D +KFE GNL
Sbjct: 156 NDTIVFNISTQKITDSVKFEPGNL 179



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 34/50 (68%), Positives = 42/50 (84%)
 Frame = +3

Query: 504 LVMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 653
           L  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IG
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIG 228


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect(2) = 0.42
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 515 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 616
           HG    G+ G H     T   L H  H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676



 Score = 25.0 bits (52), Expect(2) = 9.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 545 HHRVPRETSRLLRHCAHQGLHGTH 616
           HH  P        H  H G HG+H
Sbjct: 474 HHHAPAHHGHHGEHGTHHGHHGSH 497



 Score = 23.0 bits (47), Expect(2) = 0.42
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 590 AHQGLHGTHLRHEVEQRVHN 649
           AH G HG H  H      H+
Sbjct: 684 AHHGHHGAHHEHGAHHGAHH 703



 Score = 20.6 bits (41), Expect(2) = 9.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 590 AHQGLHGTHLRHEVEQRVHN 649
           AH G HG H  H      H+
Sbjct: 537 AHHGHHGEHGTHHGHHGSHH 556


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 286 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 417
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 443  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 279
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 235 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 98
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 235 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 98
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,061
Number of Sequences: 27780
Number of extensions: 376686
Number of successful extensions: 1140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)