Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0885.Seq
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.64 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.9  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 562 RDIPAPSTLCTSRTPRDTPSP 624
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 562 RDIPAPSTLCTSRTPRDTPSP 624
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 324 SLLRGDTVDCESALNII-D*TKQFIVFSIETTSINPAG*VGSVLTFPSTFMRRCFTIFRT 148
           SLL+ +TV C+ A++++ +   Q +V S +   I     +  + ++  + + +C T F  
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVISLNKLTSYVISGIVKC-TDFVD 439

Query: 147 SFPVKAYFR 121
              VK Y +
Sbjct: 440 KAMVKQYVK 448


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 596 DVHNVEGAGMSLAGHD 549
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 119 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 220
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 129 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 28
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 418 LGSGWCGHHALPSTEHS*VRSPH 350
           +G G    HA P   HS   +PH
Sbjct: 419 MGHGHSHIHATPHHHHSHAATPH 441


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 7   RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 114
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,370
Number of Sequences: 438
Number of extensions: 4460
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)