Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0881.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.6  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   2.1  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   5.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   6.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.7  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 729 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 595
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 53  ARVKKKTDSIDLRDPNGLRRRVPRFECETRLVK-SHCLEPPDSRGSTVSISLPDSARLAS 229
           A+  +K  ++    P G+  +VP+FE    L K SH ++P  ++ + +     D+ +   
Sbjct: 725 AKANRKPLALQSHRPLGITSQVPKFEEGYSLDKSSHDIDPERAQLNKLRAQHRDAKK--G 782

Query: 230 ALEAFRHNPRMVASHHR 280
           A+   R + R +A   R
Sbjct: 783 AIRTLRKDARFIARERR 799


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +2

Query: 95  PNG--LRRRVPRFECETRLVKSHCLEPPD-SRGSTVSISLPDSARLASALEAFRHNPRMV 265
           PNG   +RR PR   E+    SH +  P+ S  ST S  +  S+  + +  +  H   +V
Sbjct: 115 PNGEWAKRRKPRTTVESNASSSHLVSKPESSHPSTGSFEVKSSSSKSRSSMSLFH---VV 171

Query: 266 ASHHRPLGRVHEPNV 310
              + P   V+ P V
Sbjct: 172 FVLNVPTATVYRPTV 186


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 562 GARKVTTGITGLWQPSVHATLLFDPSMSALPII 464
           G  KV   +  LW+   H TLLF  +   L I+
Sbjct: 625 GKLKVIRALLTLWKKQGHRTLLFSQTRQMLDIL 657


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 612  SPYAY*TSGSSQLLPFCSTRGF 677
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,365
Number of Sequences: 5004
Number of extensions: 62269
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)