Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0881.Seq
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0846 - 21983581-21986055                                         31   0.74 
05_06_0086 - 25447063-25447182,25448082-25448702                       30   1.7  
06_01_0918 + 7083570-7083705,7083977-7084008                           29   3.9  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    29   3.9  
09_04_0407 + 17345382-17345579,17345711-17346235                       29   5.2  
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    28   6.9  

>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 83  DLRD-PNGLRRRVPRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 232
           DL+D   G +R VP  +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVP-LQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_06_0086 - 25447063-25447182,25448082-25448702
          Length = 246

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 303 GSCTRPSGRWCEATIRGLCLNASKAEASLAESGKDMLTVEPRESGGS-KQCDFTSRVSHS 127
           G C   +G W    +   C +A++ +  L  +    LT  PR +GGS ++ D  S V   
Sbjct: 87  GPCAEAAGAWGNGGVVSPCADAAR-QRPLNAAATPPLTRSPRPAGGSPRRSDRGSPVREQ 145

Query: 126 KRGTRRRSP 100
             G+  R P
Sbjct: 146 PLGSVGRLP 154


>06_01_0918 + 7083570-7083705,7083977-7084008
          Length = 55

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 532 GLWQPSVHATLLFDPSMSALPIIAKQNSP 446
           GLW+PS HA  L  P+ S L     + +P
Sbjct: 10  GLWRPSAHAAALRAPASSVLSTTPPRQTP 38


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -2

Query: 312 RTFGSCTRPSGRWCEATIRGLCLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 145
           R  GS  RP    C A I+ L  +   AEA   LA  G D++      +G  G+ Q D  
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145

Query: 144 SRV 136
            R+
Sbjct: 146 RRL 148


>09_04_0407 + 17345382-17345579,17345711-17346235
          Length = 240

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 277 VVRSYHPRIMPERL*GRSQPSRIRQGYAHCGAP 179
           + + YHP++       +S  S IR+ YAHC  P
Sbjct: 4   LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 225 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRGTRRRSPFGS 91
           A+ A +GK +   E  E   S+QCD T  + +S R  ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSR-EKKRNPYAA 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,318,961
Number of Sequences: 37544
Number of extensions: 460122
Number of successful extensions: 1245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)