Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0881.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.3  
At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    29   4.3  
At1g14740.1 68414.m01762 expressed protein                             29   4.3  
At1g70130.1 68414.m08070 lectin protein kinase, putative similar...    28   5.7  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   7.6  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    28   7.6  
At3g18770.1 68416.m02382 expressed protein                             27   10.0 
At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    27   10.0 

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 690 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 577
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 461 RNDRKSRHRRIKKQRRMNAWLPQASYPC 544
           R +RKS ++ +KK+  + +W  ++S+PC
Sbjct: 135 REERKSIYKDVKKEEEIESW-SESSHPC 161


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -2

Query: 342 YCSVREEPQFRTFGSCTRP-SGRWCEATIRGLCLNASKAEASLAESGKDMLTVEPRESGG 166
           + +VR       F S + P SG   E T+  LC N+ K   SL + GK+++T     S  
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103

Query: 165 SK--QCDFTSRVSHSKRGTRRRS 103
            K  + DF +    +   ++R++
Sbjct: 104 DKWVERDFFNLREMNPNSSKRKA 126


>At1g70130.1 68414.m08070 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733
          Length = 656

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 363 HQ*GKTNLSHDGLNPAHVPL*WVNNPTLGEFCFAMIGRADIEGSKSNVA*TLGCHKP 533
           HQ     + H  + PA++ L    N  LG+F  A +    I+   SNVA T G   P
Sbjct: 448 HQQWVQVIIHRDIKPANILLDENMNAKLGDFGLAKLCDHGIDSQTSNVAGTFGYISP 504


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 282 GRWCEATIRGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 151
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 233 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAG-RDVEAHLD 93
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At3g18770.1 68416.m02382 expressed protein 
          Length = 625

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 542 RDNWLVAAKRSCDVAF*SFDVG 477
           RD W   A R C  A  SFD+G
Sbjct: 68  RDKWFNLALRECPAALESFDIG 89


>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 517 SVHATLLFDPSMSALPIIAKQNSPSVGLFT 428
           SV   LL  P +  L  I+ QN P+VGLFT
Sbjct: 7   SVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,568,827
Number of Sequences: 28952
Number of extensions: 346374
Number of successful extensions: 881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)