Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0879.Seq
         (806 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.41 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   1.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.2  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   3.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.7  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 608 ESSGKALKSAEKKTKQTLKEAHTISNIIKARKTYW 712
           E   +  K  +KK K+T+KE +T    +   K  W
Sbjct: 252 EDEDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIW 286



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 631 KRRKEDEANFEG 666
           K+R+ED+A FEG
Sbjct: 548 KKREEDKAKFEG 559


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 413 LGGVLHQASQAQHQPHYAAALRPLPSRREA 502
           L G+    S   HQP   +  RP P+ R A
Sbjct: 238 LAGLQSSGSSRSHQPATKSKPRPAPASRNA 267


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 736 YKPVELFEPVSFPSFYNVAD 677
           Y P   FE    P++YN+AD
Sbjct: 78  YSPDNHFEQYPNPTYYNLAD 97


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +3

Query: 276 KRAAELIASNEPLVE-RARAAIQTALANQLSWDDIQLLVK-----TAQENKDSVASCIKH 437
           KR ++   SN+P++E R RA I  +L N+L    +  + K     +  E  D +   +KH
Sbjct: 29  KRVSDNRRSNKPIMEKRRRARINNSL-NELKTLILDAMKKDPARHSKLEKADILEMTVKH 87

Query: 438 LK 443
           L+
Sbjct: 88  LQ 89


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 416 GGVLHQASQAQHQPHYAAALRPLPSRREA 502
           GGV+      QHQ + AA   P   RR A
Sbjct: 16  GGVVSAEHPHQHQHYGAAVQVPQGGRRRA 44


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 554 RRYYDQKRNAAKKQQKTIESSGKALKSAEKKTK-QTLKEAHTISNIIK 694
           +R+ D+K+   ++  K+   S     S+EKK+  Q   +AH   ++ K
Sbjct: 234 KRFKDEKKELIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLDK 281


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 736 YKPVELFEPVSFPSFYN 686
           Y+PV     +++PS+YN
Sbjct: 350 YQPVTNLTNLTYPSYYN 366


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 673 HDQQHYKSSENL 708
           H QQHY+ ++N+
Sbjct: 300 HTQQHYQMNQNM 311


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 673 HDQQHYKSSENL 708
           H QQHY+ ++N+
Sbjct: 248 HTQQHYQMNQNM 259


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 673 HDQQHYKSSENL 708
           H QQHY+ ++N+
Sbjct: 431 HTQQHYQMNQNM 442


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,604
Number of Sequences: 336
Number of extensions: 2496
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)