Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0879.Seq
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 91 2e-19
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 29 0.59
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 27 2.4
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 27 4.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 7.2
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa... 25 9.6
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 25 9.6
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 25 9.6
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 90.6 bits (215), Expect = 2e-19
Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Frame = +2
Query: 515 IDIDLSLTAFANARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKEAHT--ISNI 688
+++DLSL AFANAR+ Y+ +R A K+ KT E++ KALKS ++K +Q LK + T I
Sbjct: 496 VELDLSLGAFANARKQYELRREALIKETKTAEAASKALKSTQRKIEQDLKRSTTADTQRI 555
Query: 689 IKARKTYWFEKFYWFISSDNYVVI 760
+ RKT++FEKF+WFISS+ Y+V+
Sbjct: 556 LLGRKTFFFEKFHWFISSEGYLVL 579
Score = 39.9 bits (89), Expect = 4e-04
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = +3
Query: 141 FFRLPKAED*HEDRTTRTRSSEEAAERAQGPREAR-DGAERAQTRDKRAAELIASNEPLV 317
FF +A+ + R ++E E A+ + + + AQ A+ I N LV
Sbjct: 344 FFSSIEAQKLKKRAHDRLATAERRLESAKEDQARKLQSLQDAQATCALRAQAIEMNPELV 403
Query: 318 ERARAAIQTALANQLSWDDIQLLVKTAQENKDSVASCIK-HLKLNTNHITLLLSDPYLHD 494
E + I + L + W DI+ L++ +Q+ + VA+ I+ LKL N +T+ L +P D
Sbjct: 404 EAIISYINSLLNQGMDWLDIEKLIQ-SQKRRSPVAAAIQIPLKLIKNAVTVFLPNPESVD 462
Query: 495 EKPE 506
E
Sbjct: 463 NSDE 466
Score = 32.7 bits (71), Expect = 0.063
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 62 FHPLRFAQHENLPFAEYETFDRAVDEFFSASEGRRLT*RPYN 187
F PL+ Q N E+ T++ VDEFFS+ E ++L R ++
Sbjct: 319 FQPLQLVQ-ANRKCMEFPTYNECVDEFFSSIEAQKLKKRAHD 359
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 763 GRDQQQNELLVKRY 804
GRD QQNELL ++Y
Sbjct: 581 GRDAQQNELLFQKY 594
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 29.5 bits (63), Expect = 0.59
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 578 NAAKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIKAR 700
N+ KK+ I SSG++ S+ TK+ LK +NI K R
Sbjct: 14 NSEKKRYFRIISSGQSTPSSNIYTKERLKRGKRFNNISKER 54
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 338 YGGPRALHERLVAGDELGGALVPGLRALSSVTRLSWSL 225
Y G + L+ D+L GALV G L ++ RL WS+
Sbjct: 283 YSGSLLTNISLIKADDLVGALVDG--KLPNLHRLQWSI 318
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 228 GPREARDGAERAQTRDKRAAELIASNEPLVERARAAIQTA---LANQLSWDDIQLLV 389
G +++ D + +Q++ K+ +L S +PL E +QT L L D+Q LV
Sbjct: 45 GVKDSPDSNDDSQSKKKKKKKLKKSQQPLNEENYPRLQTTENNLQKPLKISDLQELV 101
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 574 AKRGQKAAKDNRILGKSS*KRRKEDEANFEGSSHDQQHYK 693
+K + AK+ KS +R+ D+AN GSS +Q+ K
Sbjct: 1798 SKNAAQNAKELSSTAKSGSLKRQRDDANKGGSSSNQKKAK 1837
>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 651 FVFFSALLRAFPEDSIVFCCFLAAFRF 571
F +FS+ L P+ + CFL+A+ F
Sbjct: 9 FEYFSSFLGVHPDQLKLLFCFLSAYPF 35
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 114 SYSANGRFSCCANLSGWNSMFVSKYVGSPSGLGRSSFF 1
S+ A CA++SG N + K +G+ +G+G+ F
Sbjct: 76 SHEAKVYNEICASMSGLNIGELKKKLGNSAGIGQGRAF 113
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 174 EDRTTRTRSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPLVE 320
+D + R +E+ E + ++ DG D L+A++EPL E
Sbjct: 613 KDLSKRLERAEKLKEADKSRAKSEDGMPVKYDEDPLGENLVATSEPLKE 661
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,938
Number of Sequences: 5004
Number of extensions: 43582
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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