Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0879.Seq
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             82   4e-16
SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)                 31   0.83 
SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)           31   1.5  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_52134| Best HMM Match : C1_1 (HMM E-Value=1.8)                      30   1.9  
SB_19452| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  29   3.4  
SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)                 29   4.4  
SB_2513| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       29   5.9  
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)                 28   7.7  
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_37163| Best HMM Match : PQQ (HMM E-Value=0)                         28   7.7  

>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
 Frame = +3

Query: 195 RSSEEAAERAQGPREAR-DGAERAQTRDKRAAELIASNEPLVERARAAIQTALANQLSWD 371
           +S+ +  E  +   E R    + AQ  D R A+LI  N  LV+RA   + +A+ANQ+ W 
Sbjct: 23  KSALKKLENVKKDHEKRIQQLQSAQEADVRKAQLIEINLDLVDRAILVVNSAIANQIDWS 82

Query: 372 DIQLLVKTAQENKDSVASCIKHLKLNTNHITLLLSDPY 485
           +I  LVK AQ   D VAS I+ LKL TNHIT+LLSDP+
Sbjct: 83  EILNLVKEAQIQGDPVASAIRELKLQTNHITMLLSDPF 120



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 21/34 (61%), Positives = 32/34 (94%)
 Frame = +2

Query: 515 IDIDLSLTAFANARRYYDQKRNAAKKQQKTIESS 616
           +DIDLSL+A+ANAR +Y++K+++AKK+QKTI+ S
Sbjct: 153 VDIDLSLSAYANARSHYERKKHSAKKEQKTIDHS 186



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +1

Query: 160 QKIDMKTVQLEREALKKLQNVRKDHERRVTEL 255
           QK+D+K +  E+ ALKKL+NV+KDHE+R+ +L
Sbjct: 12  QKLDVKALNQEKSALKKLENVKKDHEKRIQQL 43



 Score = 35.5 bits (78), Expect = 0.051
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 704 TYWFEKFYWFISSDNYVVI 760
           T  FEKF WFISS+NYVVI
Sbjct: 282 TVAFEKFLWFISSENYVVI 300



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +1

Query: 763 GRDQQQNELLVKRY 804
           GRDQQQNEL+VKR+
Sbjct: 302 GRDQQQNELVVKRH 315


>SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)
          Length = 1271

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 180  RTTRTRSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPLVERARAA 335
            R +  RS E   +R +  ++  DG +  Q R+  AAE +  N    +++R++
Sbjct: 1069 RKSERRSGEVRPDREESDQDCEDGEQELQARNAEAAEKLPRNASQHDKSRSS 1120


>SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +3

Query: 207 EAAERAQGPREARDGAERAQTRDKRAA--ELIASNEPLVERARAAIQTALANQLSWDDIQ 380
           E+  R    ++A+      +  D+RAA  E +      +E+ RA+++TAL++    +D+ 
Sbjct: 345 ESVSRTNEEKDAQIATLTQKLEDERAAAAEEMRDKTRFLEKLRASLETALSDNKKLEDMT 404

Query: 381 LLVKTA-QENKD 413
              K A +ENK+
Sbjct: 405 EQAKAALKENKE 416


>SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)
          Length = 411

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 497 EAGTMMIDIDLSLTAFANARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTL 661
           +A     DID+++   A  RR   ++++      K  E+ GKAL    KKT + L
Sbjct: 151 DAEKAFTDIDVAILVGAMPRREGMERKDLLSANAKIFEAQGKALDKVAKKTCKIL 205


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 787  ARSAAGRGRYHHVIIRRYKPVELFEPVSF 701
            A +  G   YH+ II  YKP  L EP+SF
Sbjct: 4295 AANHKGSAEYHYEIIIEYKPELLEEPISF 4323


>SB_52134| Best HMM Match : C1_1 (HMM E-Value=1.8)
          Length = 154

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 270 RDKRAAELIASNEPLVERARAAIQTALANQLSWDDIQLLVKTAQENKDSVASC 428
           RD RA +LI  ++PL  +  + ++    N+   D    L +  + +   VA C
Sbjct: 93  RDNRANQLITQSDPLTRQTASTVRKKAINRRDQDTQTCLTRLREAHPIKVAQC 145


>SB_19452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 524 DLSLTAFAN-ARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIKAR 700
           D+    F N  RR Y+ + +A    Q     SGKA++ A KK     K++H +  ++   
Sbjct: 10  DMDTRIFLNYCRRSYNDQPSANNHHQSI--RSGKAMRRAAKKAIINAKDSHNLLGLLIFD 67

Query: 701 KTYWFEKF 724
           +   +E+F
Sbjct: 68  EKLVYEQF 75


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 180  RTTRTRSSEEAAERAQGPREARDGAERAQTRDKRAA 287
            R  +T  +++  ++A  PR+AR  A + Q +DK+AA
Sbjct: 1036 RKIKTSKAQDQDKQAARPRQARRKASKPQDQDKQAA 1071


>SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 195 RSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPLVERARAA 335
           RS E   +R +  ++  DG +  Q R+  AAE +  N    +++R++
Sbjct: 7   RSGEIRPDREESDQDCEDGEQELQARNAEAAEKLPRNASQHDKSRSS 53


>SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)
          Length = 1242

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 195  RSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPLVERARAA 335
            RS E   +R +  ++  DG +  Q R+  AAE +  +    +++R+A
Sbjct: 1045 RSGEVRPDREESDQDCEDGEQELQARNAEAAEKLPRHASQHDKSRSA 1091


>SB_2513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 605 IESSGKALKSAEKKTKQTLKEAHTISNIIKAR 700
           IES GK++K+A  K K+T +  H+ S  + A+
Sbjct: 452 IESQGKSVKAALAKAKKTHRRQHSFSYFVCAQ 483


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +3

Query: 174 EDRTTRTRSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPLVERARAAIQTALA 353
           E +     SSEEA  R     E R+G E+     + A   +      +E  +  +Q  +A
Sbjct: 206 EQKRALKESSEEAKRRVASLTEERNGLEKTNNEQEAAIRDVNERIAGIEEEKRTLQRQVA 265

Query: 354 NQ 359
            Q
Sbjct: 266 TQ 267


>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
          Length = 410

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 383 AGKDGPGEQGLGGVLHQASQAQHQPHYAAALRPLPSRREA 502
           AG+  PG +G GGV             AA + P+P+RRE+
Sbjct: 371 AGRASPGSRGAGGV---GDTQDLLDRLAADVEPVPARRES 407


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 129 LSMNFFRLPKAED*HEDRTTRTRSSEEAAERAQGPREARDGAERAQTRD 275
           +  NFF +P      + +T+R + +E +  +++ PR  R+ AE + +RD
Sbjct: 508 MQQNFFAVPALLPQVKSKTSRRKEAESSQVKSKTPR--REDAESSASRD 554


>SB_37163| Best HMM Match : PQQ (HMM E-Value=0)
          Length = 419

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 66  WNSMFVSKYVGSPSGLGRSS 7
           W+S F+  YV SP G+GR +
Sbjct: 353 WSSSFMKDYVSSPLGVGRDN 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,694,987
Number of Sequences: 59808
Number of extensions: 338808
Number of successful extensions: 1372
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)