Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0879.Seq
         (806 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.90 
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    26   1.2  
Y17702-1|CAA76822.2|  260|Anopheles gambiae putative gVAG protei...    25   3.6  
AF457548-1|AAL68778.1|  178|Anopheles gambiae antigen 5-related ...    25   3.6  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        24   6.3  
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    23   8.4  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 0.90
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 566 DQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKE 667
           D+K + A KQQKT++   ++    EK+ ++ L+E
Sbjct: 884 DRKLSEALKQQKTLQKELESWIQKEKEAQEKLEE 917


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 158 LRKPKKIHRQPYRRFHTRQTVGSRVVRISAGGTLCS 51
           L++ K++ R  YR + TR+   SR +        CS
Sbjct: 411 LKRLKRVKRAAYRHYQTRRCQRSRSIYFDTHSLYCS 446


>Y17702-1|CAA76822.2|  260|Anopheles gambiae putative gVAG protein
           precursor protein.
          Length = 260

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 473 LRPLPSRREAGTMMIDIDLSLTAFANAR--RYYDQKRNAAKK 592
           +RP PS  +  T+  D +L+  A ANAR   Y   +  A KK
Sbjct: 85  IRPYPSAVKMPTLTWDPELASLADANARSCNYGHDRCRATKK 126


>AF457548-1|AAL68778.1|  178|Anopheles gambiae antigen 5-related 1
           protein protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 473 LRPLPSRREAGTMMIDIDLSLTAFANAR--RYYDQKRNAAKK 592
           +RP PS  +  T+  D +L+  A ANAR   Y   +  A KK
Sbjct: 85  IRPYPSAVKMPTLTWDPELASLADANARSCNYGHDRCRATKK 126


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/66 (22%), Positives = 23/66 (34%)
 Frame = +3

Query: 222 AQGPREARDGAERAQTRDKRAAELIASNEPLVERARAAIQTALANQLSWDDIQLLVKTAQ 401
           A G R +         R +   EL    EP   R   A +  L +   W+ +   V +  
Sbjct: 35  APGSRHSIRHGRNGDKRSRMIKELYQQTEPKSHRPSYANKAVLLSSAKWEQMWKKVVSPA 94

Query: 402 ENKDSV 419
           E +  V
Sbjct: 95  EKETEV 100


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 584 AKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIKAR 700
           A KQQ  I+   K +K  E +TK T K    +    K R
Sbjct: 267 ALKQQLEIDVDHKEIKVREARTKGTQKATFRVPLSAKER 305


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,185
Number of Sequences: 2352
Number of extensions: 10246
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85239615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)