Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0879.Seq
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical... 95 7e-20
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 35 0.079
U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf (tbp-associ... 32 0.56
AL137227-8|CAB70242.1| 258|Caenorhabditis elegans Hypothetical ... 31 0.73
Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 31 0.97
U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 31 0.97
Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical pr... 30 2.2
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z81539-4|CAB04392.2| 208|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein. 29 3.9
Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical pr... 29 3.9
U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical pr... 29 3.9
U41024-1|AAA82345.2| 679|Caenorhabditis elegans Hypothetical pr... 29 3.9
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 29 3.9
Z81453-3|CAB03791.1| 480|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z75533-2|CAA99816.1| 245|Caenorhabditis elegans Hypothetical pr... 29 5.2
U88180-2|AAB42298.3| 355|Caenorhabditis elegans Hypothetical pr... 29 5.2
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81544-4|CAB04431.2| 329|Caenorhabditis elegans Hypothetical pr... 28 6.8
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 28 6.8
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 28 9.0
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 28 9.0
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 28 9.0
>AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical
protein Y82E9BR.18 protein.
Length = 921
Score = 94.7 bits (225), Expect = 7e-20
Identities = 41/92 (44%), Positives = 66/92 (71%)
Frame = +2
Query: 485 PSRREAGTMMIDIDLSLTAFANARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLK 664
P EA + + ID+SL A NA+R++ K++AA+K +KT+ SS KA+K+A++K K TL+
Sbjct: 415 PYDDEAEVLKVPIDISLNASKNAQRHFVDKKSAAEKVKKTVASSEKAIKNAQEKAKSTLE 474
Query: 665 EAHTISNIIKARKTYWFEKFYWFISSDNYVVI 760
+ + + K+RK+ WFEKF WFISS+ ++V+
Sbjct: 475 QVKIVVEVKKSRKSMWFEKFRWFISSEGFIVV 506
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/80 (38%), Positives = 44/80 (55%)
Frame = +3
Query: 246 DGAERAQTRDKRAAELIASNEPLVERARAAIQTALANQLSWDDIQLLVKTAQENKDSVAS 425
+ + Q++ ++ A I N LVE+A I++ALANQ SW I+ + KTA N D VA
Sbjct: 337 EALQLTQSQREQMANRIILNTELVEKALLLIRSALANQFSWQTIEEMRKTAAGNGDPVAK 396
Query: 426 CIKHLKLNTNHITLLLSDPY 485
I K N + L+DPY
Sbjct: 397 SIDSFKFENNEFMMSLADPY 416
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 160 QKIDMKTVQLEREALKKLQNVRKDHERRVTEL 255
QK + K V +E++ALKKL+NV KD + R+ L
Sbjct: 308 QKQEQKAVNMEKQALKKLENVEKDQKDRIEAL 339
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 760 SGRDQQQNELLVKRY 804
+GRD QQNELLVK+Y
Sbjct: 507 AGRDAQQNELLVKKY 521
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 34.7 bits (76), Expect = 0.079
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 RLPKAED*HEDRTTRTRSSEEAAERAQGPREARDGAERAQTR-DKRAAELIASNEPLVER 323
R + +D EDR R +S ++ AER + P + RD + R ++R+ + PL
Sbjct: 623 RSVERQDQREDRKERIKSPDDRAERRRSPEDCRDRLRSPEDRTERRSPSVERRKSPLRRD 682
Query: 324 ARAAIQTALANQ 359
R +L N+
Sbjct: 683 ERRRRHDSLENE 694
>U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 11.1
protein.
Length = 345
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +3
Query: 198 SSEEAAERAQGPR--EARDGAERAQTRDKRAAELIASNEPLVERAR--AAIQTALANQLS 365
+ E+AA A+ R EA AE A+T +KR + I+ +EP ++ R + + Q+S
Sbjct: 111 AEEQAAREAEADRVAEANRAAETAKTAEKRKIDKISKSEPPRKQPRHDDNSEAGPSGQIS 170
Query: 366 WDDIQLLVKTAQENKD 413
DD L + E+ D
Sbjct: 171 GDDDLLDTNISLESFD 186
>AL137227-8|CAB70242.1| 258|Caenorhabditis elegans Hypothetical
protein F58D5.7 protein.
Length = 258
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 273 DKRAAELIASNEPLVERARAAIQTALANQLSWDDIQLLVKTAQENKDSV 419
DK AE +E+A+A ALA+ L D+QLL K KDSV
Sbjct: 66 DKERAENSKWMNRKMEKAKATADQALASTLMVKDVQLLEKKVNILKDSV 114
>Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical
protein F33A8.1 protein.
Length = 897
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 174 EDRTTRTRSSEEAAERAQGPREARDGAERAQTRDKR 281
E T SSE++A R+Q PRE+R+ ++ +T + +
Sbjct: 28 EQPDTPKTSSEKSASRSQSPRESREVSQETETSENQ 63
>U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin
protein.
Length = 897
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 174 EDRTTRTRSSEEAAERAQGPREARDGAERAQTRDKR 281
E T SSE++A R+Q PRE+R+ ++ +T + +
Sbjct: 28 EQPDTPKTSSEKSASRSQSPRESREVSQETETSENQ 63
>Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical
protein T02G6.5 protein.
Length = 574
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 399 QENKDSVASCIKHLKLNTNHITLLLSDPYLHD 494
Q ++ S +C+K K+N L++SDP LHD
Sbjct: 258 QLSRTSSNTCLKTKKVNRKIYKLMISDPKLHD 289
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +2
Query: 443 AQHQPHYAAALRPLPSRREAGTMMIDIDLSLTAFANARRYYDQKRNAAKKQQKTIESSGK 622
A Q HY + LP M DID +AFANA+R ++KR+ + +
Sbjct: 68 ADRQAHYENSDEDLP----LDMMDADIDWENSAFANAKRRLEKKRSGVESDSDDEDD--- 120
Query: 623 ALKSAEKKTKQTLKEAH 673
++ ++K L+E H
Sbjct: 121 -VEKKKRKFAGLLEEGH 136
>Z81539-4|CAB04392.2| 208|Caenorhabditis elegans Hypothetical
protein F46A8.6 protein.
Length = 208
Score = 29.5 bits (63), Expect = 3.0
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Frame = +2
Query: 419 GVLHQASQAQHQPHYAAALRPLP-SRREAGTMMIDIDLSLTAFANARRYYDQK-RNAAKK 592
G+L + P +RP+ S REA + D + TA N ++ +K + AKK
Sbjct: 22 GILVMCFCKKKPPKSQCPVRPMTMSMREAQVSDVGPDSTRTAMDNQKKSKKKKSKEPAKK 81
Query: 593 QQKTIESS----------GKALKSAEKKTKQTL 661
++K+ +SS K+ KSAEKK + +
Sbjct: 82 KKKSADSSQKVSKKKKKSSKSKKSAEKKKPEVV 114
>Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein.
Length = 292
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 584 AKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIK 694
A K+Q I +GK LK E T+ + + HT+ +I+
Sbjct: 43 ANKEQVCIIYTGKILKDEETLTQHKIADGHTVHLVIR 79
>Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 584 AKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIK 694
A K+Q I +GK LK E T+ + + HT+ +I+
Sbjct: 43 ANKEQVCIIYTGKILKDEETLTQHKIADGHTVHLVIR 79
>Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 584 AKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIK 694
A K+Q I +GK LK E T+ + + HT+ +I+
Sbjct: 43 ANKEQVCIIYTGKILKDEETLTQHKIADGHTVHLVIR 79
>Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 584 AKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIK 694
A K+Q I +GK LK E T+ + + HT+ +I+
Sbjct: 43 ANKEQVCIIYTGKILKDEETLTQHKIADGHTVHLVIR 79
>Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical
protein R05D11.7 protein.
Length = 155
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 204 EEAAERAQGPREARDGAERAQTRDKR 281
E+ + R++ PR+ RD ER+++RD++
Sbjct: 43 EKRSSRSRSPRDKRDRRERSRSRDRK 68
>Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 584 AKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIK 694
A K+Q I +GK LK E T+ + + HT+ +I+
Sbjct: 43 ANKEQVCIIYTGKILKDEETLTQHKIADGHTVHLVIR 79
>Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 584 AKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIK 694
A K+Q I +GK LK E T+ + + HT+ +I+
Sbjct: 43 ANKEQVCIIYTGKILKDEETLTQHKIADGHTVHLVIR 79
>Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 584 AKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIK 694
A K+Q I +GK LK E T+ + + HT+ +I+
Sbjct: 43 ANKEQVCIIYTGKILKDEETLTQHKIADGHTVHLVIR 79
>U41548-2|AAA83204.1| 399|Caenorhabditis elegans Hypothetical
protein M02F4.1 protein.
Length = 399
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 565 RPKAKRGQKAAKDNRILGKSS*KRRKEDEANFEGSSHDQQHYKS 696
R + K +N G+SS R EDE+++E ++++ KS
Sbjct: 193 REEMKSRPTRRHNNNARGRSSLNHRDEDESDYENEDYEEEENKS 236
>U41024-1|AAA82345.2| 679|Caenorhabditis elegans Hypothetical
protein T14G11.3 protein.
Length = 679
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Frame = +3
Query: 165 D*HEDRTTRTRSSE-EAAERAQGPREARDGAERAQTRDKRAAELIASNEPLVERARAAIQ 341
D D TT T A E A D + ++ + ++ + L+E++R Q
Sbjct: 248 DGKRDSTTATNPLLLNAQETANKLSHQLDEINALVNKSRQESAVLNQYKDLIEKSRQ--Q 305
Query: 342 TALANQLSWDDIQLLVKTAQENKDSVASCIKHLKLNTNHITLLLSDPYLHDE 497
AL + ++ + K N+D + + I H L + + LSD + +E
Sbjct: 306 FALEMKSILPNVDIHAKDKNLNEDELNALIAHAHLKVDQLRCQLSDQQVREE 357
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 527 LSLTAFANARRYYDQKRNAAKKQQKTIESSGKALKSAE--KKTKQTLKEAHTISNII 691
LS NA++ +DQK NAA K+ +I+ + L ++ K+ +L +A T+S I
Sbjct: 274 LSYPPQTNAKKEFDQKFNAAMKKTDSIKQRIETLDRSKIAKEGFDSLIDAATVSETI 330
>Z81453-3|CAB03791.1| 480|Caenorhabditis elegans Hypothetical
protein B0250.4 protein.
Length = 480
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 26 EGEPTYLLTNIEFHPLRFAQHENLPFAEYETFDRAVDE 139
E PTY P+RF L F +YET++ +D+
Sbjct: 264 ESRPTYFCDRC---PMRFGTESALNFHQYETYEEGLDK 298
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -3
Query: 156 SEAEKNSSTALSKVSYSANGRFS--CCANLSGWN 61
SE +KNS S S+N RF+ C GWN
Sbjct: 148 SEQQKNSKKRRSSSRSSSNSRFATVCVGGFDGWN 181
>Z75533-2|CAA99816.1| 245|Caenorhabditis elegans Hypothetical
protein C54G4.3 protein.
Length = 245
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 315 VERARAAIQTALANQLSWDDIQLLVKTAQENKDSVASCIK 434
+E+A+A ALA+ L D+QLL K K+SV K
Sbjct: 70 MEKAKATADQALASTLMVKDVQLLEKKVNILKESVVQVNK 109
>U88180-2|AAB42298.3| 355|Caenorhabditis elegans Hypothetical
protein T27A3.5 protein.
Length = 355
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 207 EAAERAQGPREARDGAERAQTRDKRAAELIASNEPLV-ERARAAIQTALANQLSWDDIQL 383
E + Q R + A++ +RAA+ NEP++ + +A IQT + QLS + + L
Sbjct: 23 ETEDGTQADRPKKRPAKKRSKVVRRAAQYGDVNEPILRDFVKATIQTGV-KQLSTEFLNL 81
Query: 384 LVKTAQENK 410
++T NK
Sbjct: 82 KMETQPCNK 90
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 566 DQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIKARK 703
D+K+ KK +KT + + K EKK ++ +KE S+ A+K
Sbjct: 607 DEKKKEIKKIEKTNKVNHDEPKKEEKKNEEQVKETKLESSTTVAKK 652
>Z81544-4|CAB04431.2| 329|Caenorhabditis elegans Hypothetical
protein F49C5.2 protein.
Length = 329
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 723 NFSNQ*VFRAFIMLLIV*ASFKVCFVFFSALLRAFPEDSIV-FCCF 589
N S + V ++L+ S C +FF+ LLR D + CCF
Sbjct: 17 NPSTRTVSAVMLILVCTVGSIVNCLIFFATLLRISKRDGFLKICCF 62
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 571 KAKRGQKAAKDNRILGKSS*KRRKEDEANFEGSSHDQQHYKSSENL 708
K+K+ +KA K N+I K ++ EDE EGS D++ K + +
Sbjct: 566 KSKKSEKA-KGNKI--KKEEAKKSEDEKTKEGSKKDEKSVKKEKTV 608
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 147 RLPKAED*HEDR----TTRTRSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPL 314
+L E+ +DR T++ R+ E E Q R+A + + + +EL NE
Sbjct: 1587 QLASREEDEDDRKKGLTSKIRNLTEELESEQRARQA--AIANKKKIESQISELTEKNEAS 1644
Query: 315 VERARAAIQTALANQLSWDDIQLLVKTAQ 401
+ + + QL W D+QL V A+
Sbjct: 1645 LRQIEDLSRQLRKAQLGWKDLQLDVTEAR 1673
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 147 RLPKAED*HEDR----TTRTRSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPL 314
+L E+ +DR T++ R+ E E Q R+A + + + +EL NE
Sbjct: 1587 QLASREEDEDDRKKGLTSKIRNLTEELESEQRARQA--AIANKKKIESQISELTEKNEAS 1644
Query: 315 VERARAAIQTALANQLSWDDIQLLVKTAQ 401
+ + + QL W D+QL V A+
Sbjct: 1645 LRQIEDLSRQLRKAQLGWKDLQLDVTEAR 1673
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 147 RLPKAED*HEDR----TTRTRSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPL 314
+L E+ +DR T++ R+ E E Q R+A + + + +EL NE
Sbjct: 1587 QLASREEDEDDRKKGLTSKIRNLTEELESEQRARQA--AIANKKKIESQISELTEKNEAS 1644
Query: 315 VERARAAIQTALANQLSWDDIQLLVKTAQ 401
+ + + QL W D+QL V A+
Sbjct: 1645 LRQIEDLSRQLRKAQLGWKDLQLDVTEAR 1673
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,495,778
Number of Sequences: 27780
Number of extensions: 250392
Number of successful extensions: 1525
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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