Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0879.Seq
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 416 GGVLHQASQAQHQPHYAAALR 478
           GGV H     QHQ HY AA++
Sbjct: 16  GGVEHPH---QHQQHYGAAVQ 33


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 28  RRADIFTDEHRVPPAEIRTTREPTV 102
           RRA I  +E R P     T ++P V
Sbjct: 172 RRAQIRRNERRTPDPHDETAKKPRV 196


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 86  HENLPFAEYETFDRAVDEFF 145
           H+N P   YET  RA+  ++
Sbjct: 503 HKNKPDMNYETMGRALRYYY 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,888
Number of Sequences: 438
Number of extensions: 3022
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)