Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0879.Seq
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 96 2e-20
At1g14686.1 68414.m01754 epsin N-terminal homology (ENTH) domain... 36 0.042
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 35 0.073
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2... 33 0.29
At3g43540.2 68416.m04623 expressed protein hypothetical protein ... 31 0.68
At3g43540.1 68416.m04622 expressed protein hypothetical protein ... 31 0.68
At3g19330.3 68416.m02453 polyadenylate-binding protein-related /... 31 0.90
At3g19330.2 68416.m02452 polyadenylate-binding protein-related /... 31 0.90
At3g19330.1 68416.m02451 polyadenylate-binding protein-related /... 31 0.90
At5g55860.1 68418.m06963 expressed protein contains Pfam profile... 30 2.1
At5g53820.1 68418.m06688 expressed protein similar to ABA-induci... 29 2.7
At5g53620.2 68418.m06662 expressed protein 29 2.7
At5g53620.1 68418.m06661 expressed protein 29 2.7
At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3... 29 2.7
At1g29570.1 68414.m03616 zinc finger protein-related contains si... 29 3.6
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ... 29 4.8
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 29 4.8
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 28 8.4
At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf... 28 8.4
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 96.3 bits (229), Expect = 2e-20
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = +2
Query: 515 IDIDLSLTAFANARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKEAHTISNIIK 694
+++DLSL+A NARR+Y+ K+ KQ+KT+ + KA ++AEKKT+ L + ++ I
Sbjct: 469 VEVDLSLSAHGNARRWYEMKKKQETKQEKTVSAHEKAFRAAEKKTRHQLSQEKVVATISH 528
Query: 695 ARKTYWFEKFYWFISSDNYVVI 760
RK +WFEKF WFISS+NY+VI
Sbjct: 529 MRKVHWFEKFNWFISSENYLVI 550
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +3
Query: 285 AELIASNEPLVERARAAIQTALANQLSWDDIQLLVKTAQENKDSVASCIKHLKLNTNHIT 464
AELI N V+ A A++ ALA + WDD+ +VK ++ + VA I L L N +T
Sbjct: 388 AELIEYNLEDVDAAILAVRVALAKGMGWDDLARMVKEEKKLGNPVAGVIDRLYLEKNCMT 447
Query: 465 LLLS---DPYLHDEKPEP 509
LLL D DEK P
Sbjct: 448 LLLCNNLDEMDDDEKTVP 465
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 59 EFHPLRFAQHENLPFAEYETFDRAVDEFFSASEGRR 166
EF + Q ++ + ++ETFD A+DEF+S E +R
Sbjct: 312 EFCSILLNQFKSRVYEKFETFDAALDEFYSKIESQR 347
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 760 SGRDQQQNELLVKRY 804
SGRD QQNE++VKRY
Sbjct: 551 SGRDAQQNEMIVKRY 565
>At1g14686.1 68414.m01754 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related similar to clathrin assembly protein
AP180 (GI:6492344) [Xenopus laevis]; contains Pfam
PF01417: ENTH domain. ENTH (Epsin N-terminal homology)
domain;
Length = 339
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 138 NFFRLPKAED*HEDRTTRT--RSSEEAAERAQGPREARDGAERAQTR 272
NF R+P+A+ H D RT SSEE+AER + E + E +T+
Sbjct: 262 NFVRIPEADVIHLDELVRTAMESSEESAERTEIAEEEEEEEEEIETK 308
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 34.7 bits (76), Expect = 0.073
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 177 DRTTRTRSSEEAAERAQ-GPREARDGAERAQTRDKRAAELIASNEPLVERARAAIQTALA 353
+R R+ EA ERA G RE + A A+ R++ AE + E V RAA++ A A
Sbjct: 586 ERAAVQRAHAEARERAAAGAREKAEKAA-AEARERANAE-VREKEAKVRAERAAVERAAA 643
Query: 354 NQLSWDDIQLLVKTAQENKDSVAS 425
Q K QEN + + S
Sbjct: 644 EARGRAAAQAKAKQQQENNNDLDS 667
>At4g12780.1 68417.m02005 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 485
Score = 32.7 bits (71), Expect = 0.29
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 189 RTRSSEEAAERA-QGPREARDGAERAQTRDKRAAELIA-SNEPLVERARAAIQTALANQL 362
R R++ A ++A + EAR+ AE+A K A A E V RAA++ A A
Sbjct: 181 RERAAAGARDKAAKAAAEAREKAEKAAAEAKERANAEAREKETRVRAERAAVERAAAEAR 240
Query: 363 SWDDIQLLVKTAQENKDSVAS 425
Q K QEN + + S
Sbjct: 241 GRAAAQAKAKQQQENTNDLDS 261
>At3g43540.2 68416.m04623 expressed protein hypothetical protein
slr1699 - Synechocystis sp. (strain PCC 6803),
PIR:S75306
Length = 301
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 369 DDIQLLVKTAQENKDSVASCIKHLKLNTNHITLLLSDP 482
D+ LL +T + +S+ ++ ++LN NH+T + DP
Sbjct: 222 DETDLLEETLRPRIESIGGTLEKVRLNGNHLTPCIQDP 259
>At3g43540.1 68416.m04622 expressed protein hypothetical protein
slr1699 - Synechocystis sp. (strain PCC 6803),
PIR:S75306
Length = 373
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 369 DDIQLLVKTAQENKDSVASCIKHLKLNTNHITLLLSDP 482
D+ LL +T + +S+ ++ ++LN NH+T + DP
Sbjct: 294 DETDLLEETLRPRIESIGGTLEKVRLNGNHLTPCIQDP 331
>At3g19330.3 68416.m02453 polyadenylate-binding protein-related /
PABP-related similar to At14a (GI:11994571 and
GI:11994573) [Arabidopsis thaliana]; similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
Length = 345
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 342 TALANQLSWDDIQLLV-KTAQENKDSVASCIKHLKLNTNHITLLLSDPYLHDE 497
T + ++L DI+LL+ + Q NK+ V I+H+K T +T L+S + H E
Sbjct: 74 TQIHHRLIQPDIELLLSQVLQPNKECVQEAIRHVKQTT--LTNLVSTYFQHSE 124
>At3g19330.2 68416.m02452 polyadenylate-binding protein-related /
PABP-related similar to At14a (GI:11994571 and
GI:11994573) [Arabidopsis thaliana]; similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
Length = 349
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 342 TALANQLSWDDIQLLV-KTAQENKDSVASCIKHLKLNTNHITLLLSDPYLHDE 497
T + ++L DI+LL+ + Q NK+ V I+H+K T +T L+S + H E
Sbjct: 74 TQIHHRLIQPDIELLLSQVLQPNKECVQEAIRHVKQTT--LTNLVSTYFQHSE 124
>At3g19330.1 68416.m02451 polyadenylate-binding protein-related /
PABP-related similar to At14a (GI:11994571 and
GI:11994573) [Arabidopsis thaliana]; similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
Length = 382
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 342 TALANQLSWDDIQLLV-KTAQENKDSVASCIKHLKLNTNHITLLLSDPYLHDE 497
T + ++L DI+LL+ + Q NK+ V I+H+K T +T L+S + H E
Sbjct: 74 TQIHHRLIQPDIELLLSQVLQPNKECVQEAIRHVKQTT--LTNLVSTYFQHSE 124
>At5g55860.1 68418.m06963 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 649
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 509 MMIDIDLSLTAFANARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKEA 670
MM+ I+ + ARR + RN AK+ K ES+ AL+ +E + L EA
Sbjct: 388 MMLTINQISSETEAARREAEGMRNKAKELMKEAESAHLALEDSELHLRVALDEA 441
>At5g53820.1 68418.m06688 expressed protein similar to ABA-inducible
protein [Fagus sylvatica] GI:3901016, cold-induced
protein kin1 [Brassica napus] GI:167146
Length = 67
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 551 ARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKEAHTIS 682
A D+ NAA+ +++I+ G+ LK + +T+KE IS
Sbjct: 23 ASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEKTGIS 66
>At5g53620.2 68418.m06662 expressed protein
Length = 682
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 545 ANARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKEAHTI 679
+N + + NAA + Q+ + + ++++ AE+K ++ +E H I
Sbjct: 109 SNYESQFTEYANAAARMQEQLHENERSIREAERKLEEKDRELHAI 153
>At5g53620.1 68418.m06661 expressed protein
Length = 682
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 545 ANARRYYDQKRNAAKKQQKTIESSGKALKSAEKKTKQTLKEAHTI 679
+N + + NAA + Q+ + + ++++ AE+K ++ +E H I
Sbjct: 109 SNYESQFTEYANAAARMQEQLHENERSIREAERKLEEKDRELHAI 153
>At3g51480.1 68416.m05638 glutamate receptor family protein (GLR3.6)
plant glutamate receptor family, PMID:11379626
Length = 903
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 386 GKDGPGEQGLGGVLHQASQAQHQPHYAAALRPLPSRREAGTMMIDIDLS 532
G D G G+ + + S+ + + Y AAL P P+R ++I + LS
Sbjct: 170 GDDDYGRNGVAALGDRLSEKRCRISYKAALPPAPTRENITDLLIKVALS 218
>At1g29570.1 68414.m03616 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 321
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/71 (33%), Positives = 29/71 (40%)
Frame = +3
Query: 195 RSSEEAAERAQGPREARDGAERAQTRDKRAAELIASNEPLVERARAAIQTALANQLSWDD 374
R EA E Q R+ RD ER Q R+ +ER R Q L Q D
Sbjct: 178 RQRREAEENLQEQRQ-RDSIER-QRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDS 235
Query: 375 IQLLVKTAQEN 407
I+ + AQEN
Sbjct: 236 IERQRREAQEN 246
>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
ADP, ATP translocase 1 / adenine nucleotide translocase
1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
carrier protein 1, chloroplast precursor (ADP/ATP
translocase 1) (Adenine nucleotide translocase 1)
{Arabidopsis thaliana}
Length = 624
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 183 YGLHVNLLP-SEAEKNSSTALSKVSYSA-NGRFSCCANLSGWNSMFVSKYVGSPSGLG 16
YG+ +NL+ + K + S YSA G FS C ++ + M +S+YV + G G
Sbjct: 378 YGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTCTGVATFTMMLLSQYVFNKYGWG 435
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 183 YGLHVNLLP-SEAEKNSSTALSKVSYSA-NGRFSCCANLSGWNSMFVSKYVGSPSGLG 16
YG+ +NL+ + K + S YSA G FS C ++ + M +S+YV G G
Sbjct: 375 YGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTCTGIATFTMMLLSQYVFKKYGWG 432
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 464 AAALRPLPSRREAGTMMIDIDLSLTAFANARRYYDQKRNAAKKQQKT 604
A++ R LPS + +D + + +A +Y DQ+ N KK++ +
Sbjct: 401 ASSTRYLPSLQVIEWKKVDNSMKAIRYRSAAKYVDQENNNPKKRKSS 447
>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 315
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 114 KPSIGLSMNFFRLPKAED*HEDRTTRTRSSEEAAERAQGP-REARDGAERAQTRDKRAAE 290
KP + +SMN + H + ++++ + G E R+GA A TR R
Sbjct: 27 KPDLHISMNMAMDSGHNNHHHHQEVDNNNNDDDRDNLSGDDHEPREGAVEAPTRRPRGRP 86
Query: 291 LIASNEP 311
+ N+P
Sbjct: 87 AGSKNKP 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,718
Number of Sequences: 28952
Number of extensions: 232353
Number of successful extensions: 972
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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