Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0874.Seq
         (770 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3HTY8 Cluster: Outer membrane protein, putative; n=1; ...    34   3.4  
UniRef50_Q55FT8 Cluster: Bromodomain-containing protein; n=1; Di...    34   4.5  
UniRef50_UPI00015A5C1B Cluster: UPI00015A5C1B related cluster; n...    33   7.9  
UniRef50_Q2TWY6 Cluster: Predicted protein; n=1; Aspergillus ory...    33   7.9  

>UniRef50_A3HTY8 Cluster: Outer membrane protein, putative; n=1;
           Algoriphagus sp. PR1|Rep: Outer membrane protein,
           putative - Algoriphagus sp. PR1
          Length = 959

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 573 GGVHSFNTNVQHVQSALAPQRS*ITDP-INFTKFQV 469
           GG H FN     V   LAP RS I DP I FT+F+V
Sbjct: 464 GGTHYFNGRNWEVNWKLAPTRSTIQDPDIRFTRFRV 499


>UniRef50_Q55FT8 Cluster: Bromodomain-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: Bromodomain-containing
           protein - Dictyostelium discoideum AX4
          Length = 729

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 591 NIIDRDKRVNRQNVK*LRARAKTTVPT*HTALTEEPLSASSLPTT 725
           ++ +++  +N  N+  L A  KTT+P  +T+ T  P++ SS PTT
Sbjct: 23  HVENKENNINSDNINLLEA-TKTTLPIPNTSNTNPPMNQSSSPTT 66


>UniRef50_UPI00015A5C1B Cluster: UPI00015A5C1B related cluster; n=1;
           Danio rerio|Rep: UPI00015A5C1B UniRef100 entry - Danio
           rerio
          Length = 289

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 190 LFISLLECLFLYLFKHIKVCVTSLFP*YSVICLFVLSL 303
           LFI      F++LF H+ VC+  L   +S IC FV SL
Sbjct: 220 LFICYFVHSFVHLFVHLLVCLLVLLFVHSFICFFVYSL 257


>UniRef50_Q2TWY6 Cluster: Predicted protein; n=1; Aspergillus
           oryzae|Rep: Predicted protein - Aspergillus oryzae
          Length = 259

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 605 SIYNIDIMGSQEESIRLIQMYSTYKVLWHPK 513
           +IY++ I GS+E  IRL+Q+  T+ V W P+
Sbjct: 60  TIYHLCINGSKEAVIRLLQLGLTFSVPWDPR 90


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,858,797
Number of Sequences: 1657284
Number of extensions: 13222488
Number of successful extensions: 25377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25342
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)