Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0874.Seq
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    28   1.3  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    28   1.7  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.9  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   9.1  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   9.1  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   9.1  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   9.1  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    25   9.1  

>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 590 DIMGSQEESIRLIQMYSTYKVLWHPKDHKLPTP 492
           D + S E S  L++     +VL+HP  H++P P
Sbjct: 179 DTVLSTETSTTLVRACKDAQVLFHPAAHQIPAP 211


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 30  TGQPSDGN*LPLQLNLEVVQFLCLKNINVAKRF 128
           TG+P  G+ L   +   V ++ CLK  +V +RF
Sbjct: 45  TGRPHHGHLLASTIKDSVTRYACLKGYHVERRF 77


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +2

Query: 491 MGSVIYDLWG----AKALCTCCTFVLNEWTPPDCP 583
           + +VI+ LWG    A A+   CT+++    PP  P
Sbjct: 406 VSTVIHVLWGRLLAAAAIARICTYIMLYLKPPSSP 440


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 409 IYKQWFLRMFRYNY*TMHPIDLKLGKIYGVGN 504
           IY++W+    RY Y T    D  L ++ G+GN
Sbjct: 344 IYREWYSFFPRYVYSTNCMNDFLLTRLGGLGN 375


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 60  PLQLNLEVVQFLCLKNINVAKRFICFYIKGYI----LFISLNY 176
           PL  + E +    +K INV K+ + F I+G++    +F  LN+
Sbjct: 162 PLGKSEEDLNLRYIKVINVGKKVVAFNIRGFLAGQAVFFLLNF 204


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 409 IYKQWFLRMFRYNY*TMHPIDLKLGKIYGVGN 504
           IY++W+    RY Y T    D  L ++ G+GN
Sbjct: 334 IYQEWYSFFPRYVYSTNCMNDSLLTRLEGIGN 365


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 203 CWSAYFFIYLNILKYV*HLCSHSTVSYAY 289
           CW  Y++ +L ++ Y   + +   +SY Y
Sbjct: 384 CWDNYYYSFLQVVHYT-SITAAGYISYTY 411


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 409 IYKQWFLRMFRYNY*TMHPIDLKLGKIYGVGN 504
           IY++W+    RY Y T    D  L ++ G+GN
Sbjct: 288 IYQEWYSFFPRYVYSTNCMNDSLLTRLEGIGN 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,600
Number of Sequences: 5004
Number of extensions: 59630
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)