Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0874.Seq
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0945 - 12614658-12614909,12615200-12615325,12616684-126168...    28   7.2  
07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987...    28   9.5  

>03_02_0945 -
           12614658-12614909,12615200-12615325,12616684-12616872,
           12617059-12617169,12617629-12617744,12617861-12617966
          Length = 299

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 VITTEPCIRLT*NLVKFMGSVIYD-LWGAKALCTCCTFVLNEWTP 571
           ++T  P + +  ++VK  GSVI+D L  A A+     FV  EW P
Sbjct: 118 ILTPLPRMNIPFDIVKGKGSVIFDPLRTAAAVNEVREFVPEEWVP 162


>07_03_0408 -
           17798033-17798181,17798349-17798616,17798707-17798797,
           17800458-17800585,17800760-17800891
          Length = 255

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 567 LLLTAHDINIIDRDKRVNRQNVK*LRARAKTT---VPT 671
           LLL  H +   DR +  NR+ +  LR RAKTT   VPT
Sbjct: 111 LLLARHQLVENDRIRNGNREALTALRKRAKTTKTSVPT 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,418,826
Number of Sequences: 37544
Number of extensions: 338468
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)