Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0874.Seq
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               28   7.3  

>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 604 ETNALIDKT*SSFAREPKQPFPPNTQPSL 690
           +   LID+T ++F  +P    PPN  P L
Sbjct: 187 QAQTLIDQTTAAFQSKPNSQMPPNAPPGL 215


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +3

Query: 702 SASSLPTTDGSGLSRAQPT 758
           SASSLP+TDG+G ++A+ T
Sbjct: 634 SASSLPSTDGTGGTKAERT 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,774,910
Number of Sequences: 59808
Number of extensions: 410788
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)