Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0874.Seq
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.34 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   7.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 155 YITFNIKANKPFRDINIFQTEKLNNL 78
           Y T N    KPFR+I  F+   LN++
Sbjct: 427 YATLNRDFRKPFREILYFRCSNLNHM 452



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 494 GSVIYDLWGAKALCTCCTFVLN 559
           G+++ DLW +  + +C   +LN
Sbjct: 110 GTIMCDLWVSFDVLSCTASILN 131


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 69  LNLEVVQFLCLKNINVAKRFICFYIKGYILFIS 167
           LN E+++ +      + K+ +CF I   +LF++
Sbjct: 207 LNNEIIRSIQGTGTIILKKTVCFVIPIMLLFLA 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,093
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)