Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0873.Seq
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    27   5.9  
08_01_0566 - 5028512-5029150                                           27   5.9  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   5.9  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   7.8  

>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 10/39 (25%)
 Frame = -1

Query: 475 ESRIVIFRHYLPCREWVICA----------PAAFLGCGS 389
           +SR++IF HY  C + ++C+          PAAF+G  S
Sbjct: 524 DSRVIIFAHYRECVKEILCSLRNIDGELVRPAAFIGQSS 562


>08_01_0566 - 5028512-5029150
          Length = 212

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 294 GRHLKDASPVLDHGSAKVIQIHQN*RLRTRGPPSIGFD 181
           GRHL+D   + ++G  K   +H   RLR  G    G D
Sbjct: 47  GRHLEDGRTLAEYGIKKEANLHLALRLRGGGAAGGGGD 84


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 408 PSLDVVAVSQAPSPESNPDSPLP 340
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 130 NTCNQNSDQ*WDECFY*IKTNRRR 201
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,702
Number of Sequences: 37544
Number of extensions: 279799
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)