Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0873.Seq
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   9e-06
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.030
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   4.5  
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 27   7.9  
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 27   7.9  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -2

Query: 399 DVVAVSQAPSPESNPDSPLPVTTM 328
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -2

Query: 390 AVSQAPSPESNPDSPLPVTTM 328
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 389 PFLRLPLRNRTLIPRYP 339
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 408 PSLDVVAVSQAPSPESNPDSPLP 340
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 348 GNQGSIPEREPEKRLPHPRKAA 413
           GN+GS  + E EK LP P K A
Sbjct: 52  GNEGSEGDGEKEKMLPSPEKKA 73


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 1   LKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 123
           L D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 451 LYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 47  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 163
           D  NG+I  F    +    W   + LE IH + TL  DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 1   LKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 123
           L D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 870 LYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,209
Number of Sequences: 59808
Number of extensions: 315146
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)