Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0873.Seq
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   4.0  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   9.2  

>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 411 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 307
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 47  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 151
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 428 GNLRACCLPWMW*PFLRLPLR 366
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 89  SYSVTWITVVILELIHAIRTLTSDGMS 169
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 74  TDILSHSRYRLNTACTETC 18
           T++L H+R+ L  AC E C
Sbjct: 245 TEVLKHARFCLGLACCERC 263


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 408 PSLDVVAVSQAPSP-ESNPDSPLPVT-TMVVAETTI 307
           P+  ++  SQAP P ++ P SP+  T T+   +TT+
Sbjct: 774 PATPMLQASQAPQPLQAPPQSPMETTATVTYTKTTV 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,283
Number of Sequences: 27780
Number of extensions: 220619
Number of successful extensions: 601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)