Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0873.Seq
         (478 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.70 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   2.2  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   2.2  
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    27   5.0  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    27   6.6  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    27   6.6  
At4g38560.1 68417.m05459 expressed protein                             27   8.7  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 235 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 140
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 417 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 316
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 408 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 301
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = -2

Query: 414 LLPSLDVVAVSQAPSPESNPDSPLPVTT-MVVAETTIES**GRHLKDASPVLDHGSAKVI 238
           L+ SLD +++++A +  S+    +P++T  ++A + + S    H     P LD G  + +
Sbjct: 244 LISSLDSLSLTEALAASSSSPVTMPISTATMIASSNLSS--NHHHHRLPPWLDVGD-RDL 300

Query: 237 QIHQN*RLRTRGPPS 193
           Q+ Q+  LR    PS
Sbjct: 301 QLQQSSPLRFALSPS 315


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 452 SLPTVPGVGNLRACCLPWMW*PFLRLP 372
           S  +VPGVGN +   LPW     + +P
Sbjct: 331 SRTSVPGVGNSKGVLLPWFHRKHIMMP 357


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 226 LMNLDNFCRSMVKYRRRIFQMSALSTFDGSFCDYHG 333
           ++  DN    +  Y  R+FQ+  L T   SF   HG
Sbjct: 773 VLEYDNIYEDITSYIYRVFQIYGLKTLVKSFLPRHG 808


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 44  GDTANGSIYQFWFLRSYSVTWITVVILEL 130
           GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 360 GDIASGSKLQSLRTKSYSLETLAAVVLEL 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,700,915
Number of Sequences: 28952
Number of extensions: 214731
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)