Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0872.Seq
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   6.0  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   6.0  
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    25   8.0  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 381 FKTVKLCIYNLARRHVAPEGPGQVLRHGEAERLLRGRRHHLDARGM 244
           F  +K    N + R VA +GP +   +G +    RGR  +L   G+
Sbjct: 518 FDDLKYLSPNSSPRFVASDGPNRPASNGRSSLFSRGRASNLGDVGL 563


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 231 SPNGTCTAGNLSTLKIP 181
           SPNGT T+GN ST+  P
Sbjct: 623 SPNGTPTSGNSSTVGSP 639


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 8   DQVLPRVNADWADRLTAAL-REDLLKTLGTDGVLLSASTPQP 130
           DQ +P V+    DR+      +D+LK+LG D + +    P P
Sbjct: 82  DQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQIPVRVLAPAP 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,029
Number of Sequences: 5004
Number of extensions: 50413
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)